Rh2CG237800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008178
Physical Location & Seq
Reverse (-)
24586708 .. 24587024
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG237800.1

Sequence Viewer

Length: 219 bp
ATGACATCGTCACCGGCGGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCAGCACCAACGGTAAGAAGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCAAATATCAGAATCGGAGCTCTGGTCGACGGCGGAGGTGAAATCTGCTTTGGTCAAGAGCAGCGGAGTCGCTCATGTGAATACTGAAAAGAAAGACAAAGGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.89

Weight (kDa)

10.73

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AciI CCGC 3 cut(s) 17, 143, 174
AcoI YGGCCR 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 3, 160
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 98, 132
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 156
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BisI GCNGC 2 cut(s) 18, 172
BlsI GCNGC 2 cut(s) 19, 173
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse118I RCCGGY 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 98, 132
BspACI CCGC 3 cut(s) 17, 143, 174
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 67
BstPAI GACNNNNGTC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 20, 34, 45, 96, 130
CviKI_1 RGCY 5 cut(s) 20, 34, 45, 96, 130
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 98, 132
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 98, 132
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 18, 172
FriOI GRGCYC 2 cut(s) 98, 132
Fsp4HI GCNGC 2 cut(s) 18, 172
GluI GCNGC 2 cut(s) 18, 172
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
Hin1II CATG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 2 cut(s) 122, 177
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 3, 160
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 121, 127
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 188
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 3 cut(s) 27, 69, 118
Lsp1109I GCAGC 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 98, 132
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 4 cut(s) 74, 78, 99, 139
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 14
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 19, 173
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 18, 172
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 2 cut(s) 98, 132
SetI ASST 4 cut(s) 89, 132, 150, 214
SgeI CNNG 9 cut(s) 26, 42, 54, 68, 90, 105, 145, 178, 197
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 1 cut(s) 109
SsiI CCGC 3 cut(s) 17, 143, 174
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 41, 137
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.