Rh2DG241000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008178
Physical Location & Seq
Reverse (-)
24451222 .. 24451537
316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG241000.1

Sequence Viewer

Length: 219 bp
ATGACGTCGTCACTGGCAGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCAGCACCAACGGTAAGAGGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATCGGAGCTCTGGTCGATTGCGGAGGTGAAATCTGCTTTGGTCAAGAGCAGCGGAGGCGTTCATGTGAATACTGAAAAGAAAGACAAAGGTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.9

Weight (kDa)

11.37

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AciI CCGC 2 cut(s) 143, 174
AcyI GRCGYC 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 17, 171
AspS9I GGNCC 2 cut(s) 74, 109
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 109
BanII GRGCYC 2 cut(s) 98, 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 29, 183
BisI GCNGC 2 cut(s) 18, 172
BlsI GCNGC 2 cut(s) 19, 173
Bme18I GGWCC 2 cut(s) 74, 109
BmgT120I GGNCC 2 cut(s) 74, 109
BmiI GGNNCC 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 121
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 29, 183
BsiHKAI GWGCWC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 98, 132
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 143, 174
BspLI GGNNCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 5
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstPAI GACNNNNGTC 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 29, 183
BtsIMutI CAGTG 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 74, 109
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 20, 34, 45, 96, 130
CviKI_1 RGCY 5 cut(s) 20, 34, 45, 96, 130
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 98, 132
Eco47I GGWCC 2 cut(s) 74, 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 98, 132
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 18, 172
FriOI GRGCYC 2 cut(s) 98, 132
Fsp4HI GCNGC 2 cut(s) 18, 172
GluI GCNGC 2 cut(s) 18, 172
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 188
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 113, 121, 127
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 69, 118
Lsp1109I GCAGC 2 cut(s) 29, 183
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 9
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 98, 132
MnlI CCTC 6 cut(s) 65, 74, 78, 99, 139, 170
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 19, 173
PshAI GACNNNNGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 74, 109
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 18, 172
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 74, 109
SduI GDGCHC 2 cut(s) 98, 132
SetI ASST 5 cut(s) 8, 89, 132, 150, 214
SgeI CNNG 9 cut(s) 26, 42, 54, 68, 90, 105, 145, 178, 197
SinI GGWCC 2 cut(s) 74, 109
SsiI CCGC 2 cut(s) 143, 174
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 41, 137
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 2 cut(s) 17, 171
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 173
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 74, 109
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.