Rroxscaffold_4G00314460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008178
Physical Location & Seq
Reverse (-)
38459832 .. 38460947
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314460.1

Sequence Viewer

Length: 375 bp
ATGACGTCGTCACCGGCGGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCATCACCAATGGTAAGAGGACCAAGAGGGAGGTCATCGGCTCAAAGTGGAGGGTCCGAAGATCGAATCGAGCTGCGGTCGACGGCGGAGGTGAAATCTGCTTTGGTCGAGAGCAGCGAAGGCGCTCATGTGAATACCGAAAAGAAAGACAAAGAGGCAATAACCTGGTCAAACCCCGCGTCTCGTATCATAGTGTTCGGTGCTATTGGTACATTTGTGTCCTGCACCATCATAGCATTTGGTGGTGATGGGGTGAGTTTAGAAAACCACAAGGTTAATGATGTGGCGAGTTTAGAAAACCGAATGCGGCGAGTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.31

Weight (kDa)

9.35

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 134
AccII CGCG 1 cut(s) 233
AciI CCGC 5 cut(s) 17, 130, 140, 231, 361
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 240
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 127, 168
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 74, 108
AsuHPI GGTGA 5 cut(s) 3, 51, 157, 311, 319
AvaII GGWCC 2 cut(s) 74, 108
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 114, 180
BccI CCATC 3 cut(s) 64, 290, 296
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 373
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 4 cut(s) 18, 128, 169, 362
BlsI GCNGC 4 cut(s) 19, 129, 170, 363
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 74, 108
BmgT120I GGNCC 2 cut(s) 74, 108
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 13
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 114, 180
BsgI GTGCAG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 5 cut(s) 17, 130, 140, 231, 361
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 5
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 174, 367
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 114, 180
BsuRI GGCC 1 cut(s) 20
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 74, 108
CseI GACGC 1 cut(s) 222
CsiI ACCWGGT 1 cut(s) 218
Csp6I GTAC 1 cut(s) 264
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 20, 34, 45, 95, 127
CviKI_1 RGCY 5 cut(s) 20, 34, 45, 95, 127
CviQI GTAC 1 cut(s) 264
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 74, 108
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 1 cut(s) 185
FaiI YATR 3 cut(s) 183, 245, 287
FatI CATG 1 cut(s) 181
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 18, 128, 169, 362
Fsp4HI GCNGC 4 cut(s) 18, 128, 169, 362
FspBI CTAG 1 cut(s) 373
GlaI GCGC 1 cut(s) 178
GluI GCNGC 4 cut(s) 18, 128, 169, 362
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 14
HphI GGTGA 5 cut(s) 3, 51, 157, 311, 319
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 2 cut(s) 10, 139
HpyAV CCTTC 2 cut(s) 56, 167
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 367
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 27, 205, 232, 289
Lsp1109I GCAGC 2 cut(s) 114, 180
MabI ACCWGGT 1 cut(s) 218
MaeI CTAG 1 cut(s) 373
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 9
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 372
MnlI CCTC 6 cut(s) 65, 74, 78, 98, 136, 202
MseI TTAA 2 cut(s) 36, 330
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 220
Mva1269I GAATGC 1 cut(s) 363
MvaI CCWGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 174, 367
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 19, 129, 170, 363
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 74, 108
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 36, 330
SatI GCNGC 4 cut(s) 18, 128, 169, 362
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 74, 108
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 372
SetI ASST 6 cut(s) 8, 89, 129, 147, 221, 330
SexAI ACCWGGT 1 cut(s) 218
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 2 cut(s) 74, 108
SsiI CCGC 5 cut(s) 17, 130, 140, 231, 361
SspMI CTAG 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 29
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 41, 118, 123, 134, 162
TauI GCSGC 2 cut(s) 20, 364
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 36, 330
Tru9I TTAA 2 cut(s) 36, 330
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 2 cut(s) 127, 168
Tsp45I GTSAC 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 74, 108
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 1 cut(s) 373
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.