Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008178

Physical Location & Seq

Genomic Coordinates Reverse (-)

33796609 .. 33800284

Gene Structure 3676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG270900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 518 bp

ATGATGTCTTCATCGGCCGCCAAACTCCCTTGGTTTAAATCGAGCCTTCACTTTCCAGCACCAACGGTAAGAGGACTAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCAAAGATCAGAATTGGAGCTCTGGTCGATGGCGGAGGTTAAATCTGCTTTGGTCGAGAGCAGCGGAGGTGCTCATGTGAATACTAAAAAGAAAGACAAAGGATCCGAGAGAGCTCAAGTTTGCTTTGGAATCATTCTTGGAGTTGACATTGATCTCGATGAGTTTGTAATTCCGATGTTGATGTTCTCTTCGTCTCTCTCGAATCCACATTCATTTCATACTGATACAGCTCAACTGATATCAAACTGGGCATCTCTCAAGTCTGTAGTGAACCCCCAGCCATCGACCACAGAGCACCTGCGGCCCTACCGGAACCCTAATCACATATTCATCAACGGAGAAGAAGAAGAAGAAATTGGGGCCAATTTTTTGGAGGGCTTGAAGTCTTCATCAAAGTTGATTGACGC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.04

Weight (kDa)

7.03

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147181
rosa_laevigata	RLG00000009283 RLG00000009752
rosa_roxburghii	Rroxscaffold_4G00314460
rosa_rugosa	Rorug02G0025400 Rorug06G0087700
rosa_samantha	Rh1CG328700 Rh2CG237800 Rh2DG241000 Rh2DG693200 Rh3DG361200 Rh4AG247200 Rh4AG247900 Rh4CG260600 Rh4DG044600 Rh4DG247900 Rh5AG399200 Rh5BG270900 Rh6AG169600 Rh6AG189100 Rh6BG136000 Rh6BG192300 Rh7AG145600 Rh7CG149600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	417
AciI	CCGC	4 cut(s)	18, 143, 174, 412
AclWI	GGATC	2 cut(s)	207, 220
AcoI	YGGCCR	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	493
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	3 cut(s)	130, 224, 341
AluI	AGCT	3 cut(s)	130, 224, 341
Alw21I	GWGCWC	4 cut(s)	132, 184, 226, 408
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	207, 220
AoxI	GGCC	3 cut(s)	15, 413, 471
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	109, 414, 471
AvaII	GGWCC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	212
BanII	GRGCYC	3 cut(s)	98, 132, 226
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	4 cut(s)	132, 184, 226, 408
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	133, 400
BcoDI	GTCTC	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	18, 172, 413
BlsI	GCNGC	3 cut(s)	19, 173, 414
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	109, 414, 471
BmiI	GGNNCC	4 cut(s)	110, 214, 425, 472
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	371
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	210, 353
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse1I	ACTGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	17, 415, 473
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	4 cut(s)	132, 184, 226, 408
BsiSI	CCGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	309
BsmBI	CGTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	17, 415, 473
Bsp1286I	GDGCHC	5 cut(s)	98, 132, 184, 226, 408
Bsp143I	GATC	3 cut(s)	116, 212, 262
BspACI	CCGC	4 cut(s)	18, 143, 174, 412
BspANI	GGCC	3 cut(s)	17, 415, 473
BspLI	GGNNCC	4 cut(s)	110, 214, 425, 472
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	207, 220
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	116, 212, 262
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	119, 215, 265
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	116, 212, 262
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	17, 415, 473
BveI	ACCTGC	1 cut(s)	417
Cfr13I	GGNCC	3 cut(s)	109, 414, 471
CviAII	CATG	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	118, 214, 264
DpnII	GATC	3 cut(s)	116, 212, 262
DraI	TTTAAA	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	2 cut(s)	130, 224
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	3 cut(s)	98, 132, 226
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	2 cut(s)	130, 224
EcoICRI	GAGCTC	2 cut(s)	130, 224
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	3 cut(s)	98, 132, 226
ErhI	CCWWGG	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	309
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	186, 330, 437
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	18, 172, 413
FriOI	GRGCYC	3 cut(s)	98, 132, 226
Fsp4HI	GCNGC	3 cut(s)	18, 172, 413
GluI	GCNGC	3 cut(s)	18, 172, 413
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	3 cut(s)	17, 415, 473
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	240, 313
HpaII	CCGG	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	256, 382
Hpy188I	TCNGA	3 cut(s)	121, 217, 285
Hpy188III	TCNNGA	3 cut(s)	166, 266, 310
Hpy8I	GTNNAC	2 cut(s)	256, 382
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	116, 212, 262
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	69, 118, 343, 401, 422, 434
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	371
MalI	GATC	3 cut(s)	118, 214, 264
MboI	GATC	3 cut(s)	116, 212, 262
MboII	GAAGA	6 cut(s)	291, 464, 467, 470, 473, 489
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	5 cut(s)	98, 132, 184, 226, 408
MluCI	AATT	4 cut(s)	122, 279, 465, 475
MnlI	CCTC	7 cut(s)	65, 74, 78, 99, 139, 170, 478
MseI	TTAA	2 cut(s)	36, 150
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	116, 212, 262
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	4 cut(s)	110, 214, 425, 472
PaqCI	CACCTGC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	240, 313
PkrI	GCNGC	3 cut(s)	19, 173, 414
Psp124BI	GAGCTC	2 cut(s)	132, 226
PspFI	CCCAGC	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	110, 214, 425, 472
PspPI	GGNCC	3 cut(s)	109, 414, 471
PsuI	RGATCY	1 cut(s)	212
SacI	GAGCTC	2 cut(s)	132, 226
SaqAI	TTAA	2 cut(s)	36, 150
SatI	GCNGC	3 cut(s)	18, 172, 413
Sau3AI	GATC	3 cut(s)	116, 212, 262
Sau96I	GGNCC	3 cut(s)	109, 414, 471
SduI	GDGCHC	5 cut(s)	98, 132, 184, 226, 408
SetI	ASST	7 cut(s)	89, 132, 150, 181, 226, 343, 411
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	225, 368
SmoI	CTYRAG	2 cut(s)	225, 368
Sse9I	AATT	4 cut(s)	122, 279, 465, 475
SsiI	CCGC	4 cut(s)	18, 143, 174, 412
SstI	GAGCTC	2 cut(s)	132, 226
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	6 cut(s)	41, 137, 165, 267, 311, 395
TasI	AATT	4 cut(s)	122, 279, 465, 475
TauI	GCSGC	2 cut(s)	20, 415
TfiI	GAWTC	2 cut(s)	240, 313
Tru1I	TTAA	2 cut(s)	36, 150
Tru9I	TTAA	2 cut(s)	36, 150
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	4 cut(s)	312, 317, 430, 489
TspGWI	ACGGA	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.