Rh4AG247200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008178
Physical Location & Seq
Reverse (-)
55932912 .. 55934709
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG247200.1

Sequence Viewer

Length: 354 bp
ATGACGTCGTCTCCGGCGGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCAGCACCAATGGTAAGAGGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATTAGAGCTCTGGTCGACAGTGGAGGTGAAATATGCTTTGGTCGAGAGCACCGAAGGCGCTCATGTGAATACTGAAAAGAAAGACAAACGGCTACATGAAATTTTGAACCTTGGCGTAATGAGGATGAGGAAGCGGATGAGGAGAAGTAGAAGAGGGAGATGCCATGAAATCTTTGGAGAACATATGCTTGGATTCAAAAAGGGGGATGGATACGCTTGCCACTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

10.76

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 137
AciI CCGC 2 cut(s) 17, 256
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 229, 319
AjuI GAANNNNNNNTTGG 4 cut(s) 143, 175, 294, 326
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 2 cut(s) 132, 173
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 74, 109
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 109
BanII GRGCYC 2 cut(s) 98, 132
Bbv12I GWGCWC 2 cut(s) 132, 173
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 183
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 74, 109
BmgT120I GGNCC 2 cut(s) 74, 109
BmiI GGNNCC 1 cut(s) 110
BmsI GCATC 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 29, 232
BsaXI ACNNNNNCTCC 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 29, 232
BseGI GGATG 3 cut(s) 252, 264, 334
BseRI GAGGAG 1 cut(s) 277
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 132, 173
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 98, 132, 173
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 17, 256
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 29, 232
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 29, 232
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 340
BstF5I GGATG 3 cut(s) 252, 264, 334
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 177
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 3 cut(s) 252, 264, 334
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 74, 109
CviAII CATG 3 cut(s) 185, 218, 287
CviJI RGCY 6 cut(s) 20, 34, 45, 96, 130, 214
CviKI_1 RGCY 6 cut(s) 20, 34, 45, 96, 130, 214
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 29, 232
Eco24I GRGCYC 2 cut(s) 98, 132
Eco47I GGWCC 2 cut(s) 74, 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 29, 232
EcoT38I GRGCYC 2 cut(s) 98, 132
ErhI CCWWGG 2 cut(s) 29, 232
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 3 cut(s) 188, 221, 290
FaiI YATR 6 cut(s) 156, 186, 219, 288, 306, 308
FatI CATG 3 cut(s) 184, 217, 286
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 3 cut(s) 259, 271, 341
FriOI GRGCYC 2 cut(s) 98, 132
Fsp4HI GCNGC 1 cut(s) 18
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 188, 221, 290
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 113, 121
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 56, 170
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 188, 221, 290
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 27, 69, 118
LweI GCATC 1 cut(s) 272
MaeII ACGT 1 cut(s) 5
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 126, 285
MhlI GDGCHC 3 cut(s) 98, 132, 173
MluCI AATT 2 cut(s) 122, 222
MnlI CCTC 9 cut(s) 65, 74, 78, 99, 139, 237, 243, 255, 269
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeI CATATG 1 cut(s) 306
NdeII GATC 1 cut(s) 116
NlaIII CATG 3 cut(s) 188, 221, 290
NlaIV GGNNCC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 74, 109
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 74, 109
SduI GDGCHC 3 cut(s) 98, 132, 173
SetI ASST 5 cut(s) 8, 89, 132, 150, 234
SfaNI GCATC 1 cut(s) 272
SinI GGWCC 2 cut(s) 74, 109
Sse9I AATT 2 cut(s) 122, 222
SsiI CCGC 2 cut(s) 17, 256
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 2 cut(s) 29, 232
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 41, 137, 165
TasI AATT 2 cut(s) 122, 222
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 234, 303
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 74, 109
XapI RAATTY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 137
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.