Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008178

Physical Location & Seq

Genomic Coordinates Reverse (-)

44719689 .. 44723634

Gene Structure 3946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG361200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGTGGAGGTGGAATCTGCTTTGGTCGGGAGCAGCAGAGTAGCTCTGGTTAGGAAGGACTTGGTGTTCGAGCCTTTATCAGAGGACTCCCAGATGCTCTGGTGCCAGAAGCTTCTCAAATTCATTGATTCTCCTGGTTGTCTTGAAGAGTTCTTCAGCTTCGTTTTCAATAACTTAAAAGATACTCATGTCAGGAAGGAACAGAAAACTTATATATTGCTTGAGCACAGGTTCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0000325 GO:0001101 GO:0001558 GO:0001727 GO:0001932 GO:0001934 GO:0001959 GO:0003376 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004888 GO:0004930 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006457 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006793 GO:0006796 GO:0006807 GO:0006937 GO:0006940 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008284 GO:0008289 GO:0008481 GO:0008610 GO:0009056 GO:0009058 GO:0009705 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009889 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010799 GO:0010800 GO:0010803 GO:0010941 GO:0016020 GO:0016042 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017050 GO:0017076 GO:0019219 GO:0019220 GO:0019222 GO:0019722 GO:0019751 GO:0019899 GO:0019902 GO:0019903 GO:0019932 GO:0022603 GO:0023051 GO:0023052 GO:0023056 GO:0030148 GO:0030149 GO:0030258 GO:0030307 GO:0030334 GO:0030335 GO:0030554 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032870 GO:0032879 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0035556 GO:0035639 GO:0036094 GO:0038023 GO:0038036 GO:0040008 GO:0040012 GO:0040017 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044057 GO:0044093 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045125 GO:0045765 GO:0045766 GO:0045787 GO:0045927 GO:0045931 GO:0045933 GO:0045937 GO:0045987 GO:0046165 GO:0046173 GO:0046466 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0046521 GO:0046834 GO:0046872 GO:0048145 GO:0048146 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051270 GO:0051272 GO:0051716 GO:0051721 GO:0051726 GO:0060089 GO:0060255 GO:0060548 GO:0060759 GO:0065007 GO:0065009 GO:0070300 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0090257 GO:0090351 GO:0090520 GO:0097159 GO:0097164 GO:0097305 GO:0097306 GO:0097367 GO:0098588 GO:0098805 GO:1901222 GO:1901224 GO:1901265 GO:1901342 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903320 GO:1903322 GO:1903506 GO:1904018 GO:2000026 GO:2000112 GO:2000145 GO:2000147 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04020 ko04071 ko04072 ko04370 ko04371 ko04666 ko05152 map00600 map01100 map04020 map04071 map04072 map04370 map04371 map04666 map05152

Pfam Domains

Protein Families

DAGK_cat

Protein Analysis

80

Amino Acids

9.37

Weight (kDa)

6.08

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147181
rosa_laevigata	RLG00000009283 RLG00000009752
rosa_roxburghii	Rroxscaffold_4G00314460
rosa_rugosa	Rorug02G0025400 Rorug06G0087700
rosa_samantha	Rh1CG328700 Rh2CG237800 Rh2DG241000 Rh2DG693200 Rh3DG361200 Rh4AG247200 Rh4AG247900 Rh4CG260600 Rh4DG044600 Rh4DG247900 Rh5AG399200 Rh5BG270900 Rh6AG169600 Rh6AG189100 Rh6BG136000 Rh6BG192300 Rh7AG145600 Rh7CG149600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	146, 169, 235
AjnI	CCWGG	1 cut(s)	133
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	44, 112, 159
AluI	AGCT	3 cut(s)	44, 112, 159
Alw21I	GWGCWC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BanI	GGYRCC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	45
CviAII	CATG	2 cut(s)	188, 240
CviJI	RGCY	4 cut(s)	44, 73, 112, 159
CviKI_1	RGCY	4 cut(s)	44, 73, 112, 159
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	191, 243
FaiI	YATR	4 cut(s)	189, 213, 215, 241
FatI	CATG	2 cut(s)	187, 239
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	191, 243
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	14, 86, 128
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	28, 143, 193
HpyAV	CCTTC	2 cut(s)	49, 190
Hsp92II	CATG	2 cut(s)	191, 243
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	8 cut(s)	32, 85, 104, 119, 120, 147, 178, 214
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	84
MboII	GAAGA	2 cut(s)	145, 158
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NlaIII	CATG	2 cut(s)	191, 243
NlaIV	GGNNCC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	14, 128
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	5 cut(s)	12, 46, 114, 161, 233
SfaNI	GCATC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	133
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	14, 128
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	112
XapI	RAATTY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.