RLG00000009752

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008178
Physical Location & Seq
Forward (+)
57341672 .. 57343058
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009752

Sequence Viewer

Length: 348 bp
ATGGAGGAATTAAGGGAGACTTCGTCTCTCCTCCTAGATGATTTCGAAGAAAACCTGCAGTCTATCACCTTCGAGTCTCAGCATTGGTGGCGGTCCAGTTTCGCCAGCGAGAGTAGGAAAGGTTGCAAGAAGATTCGATGCAGTTACTCACATGAAGTAACTGACCCTATTTTGCGGGAGTGGATAAACGATGCTGTAAGAAGACCAAGAGGGAGGTTATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATCAGAGCTCTGGTCGACACTGGAGGTGAAATCTGCTTTGGTCGAGAGCAGCGGAGGCGCTCATGTGAATACTGAAAAGAAAGACAAAGGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

7.82

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 266
AciI CCGC 3 cut(s) 91, 175, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 3 cut(s) 11, 30, 81
ApeKI GCWGC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 93, 238
AsuHPI GGTGA 2 cut(s) 58, 289
AsuII TTCGAA 1 cut(s) 45
AvaII GGWCC 2 cut(s) 93, 238
BanII GRGCYC 2 cut(s) 227, 261
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 11, 30, 81
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 93, 238
BmgT120I GGNCC 2 cut(s) 93, 238
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 2 cut(s) 128, 181
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse1I ACTGG 2 cut(s) 96, 276
Bse8I GATNNNNATC 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 250
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 96, 276
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 261
BsmAI GTCTC 3 cut(s) 11, 30, 81
BsmBI CGTCTC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 227, 261
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 3 cut(s) 91, 175, 303
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 239
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 45
BsrI ACTGG 2 cut(s) 96, 276
BssMI GATC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 3 cut(s) 11, 30, 81
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 88, 306
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 93, 238
CviAII CATG 2 cut(s) 152, 314
CviJI RGCY 2 cut(s) 225, 259
CviKI_1 RGCY 2 cut(s) 225, 259
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 227, 261
Eco47I GGWCC 2 cut(s) 93, 238
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 227, 261
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 2 cut(s) 155, 317
FaiI YATR 2 cut(s) 153, 315
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 151, 313
FauI CCCGC 1 cut(s) 168
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 301
FriOI GRGCYC 2 cut(s) 227, 261
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 312
HhaI GCGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 155, 317
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 3 cut(s) 74, 133, 251
HphI GGTGA 2 cut(s) 58, 289
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 242, 250, 256
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 58, 126, 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 306
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 155, 317
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 68, 109, 118, 247, 257
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 128, 181
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 143, 157
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 4 cut(s) 59, 142, 213, 255
MhlI GDGCHC 2 cut(s) 227, 261
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 6 cut(s) 41, 203, 207, 228, 268, 299
MseI TTAA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 88, 306
NdeII GATC 1 cut(s) 245
NlaIII CATG 2 cut(s) 155, 317
NlaIV GGNNCC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 45
PfeI GAWTC 2 cut(s) 133, 251
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 93, 238
PstI CTGCAG 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 22
SacI GAGCTC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 2 cut(s) 93, 238
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 2 cut(s) 227, 261
SetI ASST 7 cut(s) 57, 71, 124, 218, 261, 279, 343
SfaNI GCATC 2 cut(s) 128, 181
SfcI CTRYAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 2 cut(s) 93, 238
Sse9I AATT 1 cut(s) 8
SsiI CCGC 3 cut(s) 91, 175, 303
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 261
TaqI TCGA 5 cut(s) 45, 72, 136, 266, 294
TasI AATT 1 cut(s) 8
TfiI GAWTC 2 cut(s) 133, 251
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 93, 238
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.