Rh6AG189100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008178
Physical Location & Seq
Reverse (-)
33576072 .. 33576387
316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG189100.1

Sequence Viewer

Length: 219 bp
ATGATGTCATCACCGGCGGCCAAACTCCCTTGGGTTAAATCGAGCCTTCACTTTCCAACACCAACAGTAAGAGGACCAAGAAGGAGGTCATTGGACTCAAAGTGGAGGGTCCAAAGATCAGAATCGGAGCTCTGGTCTACGACGGAGGTGAAATCTGCTTTGGTTGAGAGCAGCGGAGGCGCTCATGTGAATACTGAAAAGAAAGACAAAGGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

10.36

Isoelectric Point (pI)

76.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AciI CCGC 2 cut(s) 17, 174
AcoI YGGCCR 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 74, 109
AsuHPI GGTGA 2 cut(s) 3, 160
AvaII GGWCC 2 cut(s) 74, 109
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 2 cut(s) 18, 172
BlsI GCNGC 2 cut(s) 19, 173
Bme18I GGWCC 2 cut(s) 74, 109
BmgT120I GGNCC 2 cut(s) 74, 109
BmiI GGNNCC 1 cut(s) 110
BoxI GACNNNNGTC 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse118I RCCGGY 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 121
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 17, 174
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstPAI GACNNNNGTC 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 20
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 74, 109
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 20, 45, 130
CviKI_1 RGCY 3 cut(s) 20, 45, 130
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 74, 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 18, 172
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 18, 172
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 18, 172
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 2 cut(s) 95, 122
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 3, 160
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 121, 127
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 56, 75
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 27, 118
Lsp1109I GCAGC 1 cut(s) 183
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 5 cut(s) 65, 78, 99, 139, 170
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 177
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 19, 173
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PshAI GACNNNNGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 74, 109
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 18, 172
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 74, 109
SchI GAGTC 1 cut(s) 89
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 89, 132, 150, 214
SgeI CNNG 6 cut(s) 26, 42, 54, 90, 145, 197
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 2 cut(s) 74, 109
SsiI CCGC 2 cut(s) 17, 174
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 41
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 74, 109
XmiI GTMKAC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.