Rh6BG136000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008178
Physical Location & Seq
Reverse (-)
21556709 .. 21576043
19335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG136000.1

Sequence Viewer

Length: 300 bp
ATGACGTCGTCACCGGTGGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCAGCACCAATGGTAAGAGGACCAAGAGAGAGGTCATCGGGCTCAAAGTGGAGGGTCCAAAGATTAGAATCAGAGCTCTGGTCGATGGCGGAGGTGAAATCTGCTTTGGTCGAGAGCAGCGCAGGCGCTCATGTGAATACTGAAAAGAAAGACAAAGTTTCTCAGTTAATCGGACTCCCTCTTTTTGTCGCTTCAACCTCCTCTTCCGATGCCCCACTACTAGTGGATTGCGAGGCAACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.74

Weight (kDa)

8.93

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AciI CCGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 249
AhlI ACTAGT 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 171
AsiGI ACCGGT 1 cut(s) 13
AspLEI GCGC 2 cut(s) 176, 182
AspS9I GGNCC 2 cut(s) 74, 109
AsuHPI GGTGA 2 cut(s) 3, 160
AvaII GGWCC 2 cut(s) 74, 109
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 2 cut(s) 98, 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme18I GGWCC 2 cut(s) 74, 109
BmgT120I GGNCC 2 cut(s) 74, 109
BmiI GGNNCC 1 cut(s) 110
BmsI GCATC 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 29
BseJI GATNNNNATC 1 cut(s) 121
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 98, 132
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 29
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 176, 182
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 176, 182
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 74, 109
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 20, 34, 45, 96, 130
CviKI_1 RGCY 5 cut(s) 20, 34, 45, 96, 130
DdeI CTNAG 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 98, 132
Eco47I GGWCC 2 cut(s) 74, 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 98, 132
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 98, 132
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 175, 181
GluI GCNGC 1 cut(s) 172
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 176, 182
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 2 cut(s) 174, 180
HinP1I GCGC 2 cut(s) 174, 180
HinfI GANTC 2 cut(s) 122, 228
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 3, 160
Hpy188I TCNGA 3 cut(s) 127, 227, 262
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 2 cut(s) 174, 180
LpnPI CCDG 4 cut(s) 27, 69, 118, 162
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 9
MboII GAAGA 1 cut(s) 249
MhlI GDGCHC 2 cut(s) 98, 132
MlsI TGGCCA 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 8 cut(s) 65, 78, 99, 139, 243, 262, 265, 280
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 36, 221
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 177
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 74, 109
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 36, 221
SatI GCNGC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 74, 109
SchI GAGTC 1 cut(s) 222
SduI GDGCHC 2 cut(s) 98, 132
SetI ASST 5 cut(s) 8, 89, 132, 150, 254
SfaNI GCATC 1 cut(s) 253
SgrAI CRCCGGYG 1 cut(s) 13
SinI GGWCC 2 cut(s) 74, 109
SpeI ACTAGT 1 cut(s) 274
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 29
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 41, 137, 165
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 36, 221
Tru9I TTAA 2 cut(s) 36, 221
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 9
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 74, 109
XspI CTAG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.