Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008178

Physical Location & Seq

Genomic Coordinates Reverse (-)

90980152 .. 90982540

Gene Structure 2389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG693200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCATCCCAGTCCCAGATTGTTGGTTATCCCGGCATAGGACTCGAGAGAGCTCAAGTTTGCTTTGGAATCATTCTTGGAGTTGACATTGATCTCGAAAGTTATGATCTGTGCTATGAGGGAGAAGGTCTGCCCGTTCTTACTGGTGCCAAGTGCCAACACCAAGCTAAGCAACATGGCAAGTATCAGGGATGTGTCCCAAGGATTATAGACAGTAGCTTGACTTGTAGACATGGAGCTGCAAGGTACCCGGCCACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008301 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016043 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.35

Weight (kDa)

6.24

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147181
rosa_laevigata	RLG00000009283 RLG00000009752
rosa_roxburghii	Rroxscaffold_4G00314460
rosa_rugosa	Rorug02G0025400 Rorug06G0087700
rosa_samantha	Rh1CG328700 Rh2CG237800 Rh2DG241000 Rh2DG693200 Rh3DG361200 Rh4AG247200 Rh4AG247900 Rh4CG260600 Rh4DG044600 Rh4DG247900 Rh5AG399200 Rh5BG270900 Rh6AG169600 Rh6AG189100 Rh6BG136000 Rh6BG192300 Rh7AG145600 Rh7CG149600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	2 cut(s)	146, 246
AccI	GTMKAC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	252
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	53, 167, 219, 239
AluI	AGCT	4 cut(s)	53, 167, 219, 239
Alw21I	GWGCWC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	246
AsuC2I	CCSGG	2 cut(s)	33, 251
AvaI	CYCGRG	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	146, 246
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BcnI	CCSGG	2 cut(s)	33, 251
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	33, 251
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	148, 248
BmrFI	CCNGG	2 cut(s)	33, 251
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	4
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	33, 251
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	10, 148
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	5, 197
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	10, 148
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	2 cut(s)	146, 246
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	33, 251
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	91, 106
Bsp1720I	GCTNAGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	148, 248
BspT107I	GGYRCC	2 cut(s)	146, 246
BsrI	ACTGG	2 cut(s)	10, 148
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	91, 106
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	215, 259
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	5, 197
BstKTI	GATC	2 cut(s)	94, 109
BstMBI	GATC	2 cut(s)	91, 106
BstSCI	CCNGG	2 cut(s)	31, 249
BstV1I	GCAGC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	5, 197
BtsIMutI	CAGTG	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	176, 233
CviJI	RGCY	5 cut(s)	53, 167, 219, 239, 254
CviKI_1	RGCY	5 cut(s)	53, 167, 219, 239, 254
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	93, 108
DpnII	GATC	2 cut(s)	91, 106
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	179, 236
FaiI	YATR	7 cut(s)	38, 105, 117, 177, 209, 234, 262
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	175, 232
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	204
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	33, 251
Hin1II	CATG	2 cut(s)	179, 236
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	42, 69
HpaII	CCGG	2 cut(s)	33, 251
Hpy166II	GTNNAC	2 cut(s)	85, 230
Hpy188III	TCNNGA	2 cut(s)	46, 95
Hpy8I	GTNNAC	2 cut(s)	85, 230
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	215, 259
HpyCH4V	TGCA	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	179, 236
KpnI	GGTACC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	91, 106
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	23, 29, 46, 129, 173
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	14
MalI	GATC	2 cut(s)	93, 108
MboI	GATC	2 cut(s)	91, 106
MhlI	GDGCHC	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	1 cut(s)	112
MspI	CCGG	2 cut(s)	33, 251
MspR9I	CCNGG	2 cut(s)	33, 251
NciI	CCSGG	2 cut(s)	33, 251
NdeII	GATC	2 cut(s)	91, 106
NlaIII	CATG	2 cut(s)	179, 236
NlaIV	GGNNCC	2 cut(s)	148, 248
PaeR7I	CTCGAG	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	148, 248
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	55
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	91, 106
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	33, 251
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	6 cut(s)	55, 130, 169, 221, 241, 248
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 54
SmoI	CTYRAG	2 cut(s)	44, 54
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	31, 249
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	215, 259
TaqI	TCGA	2 cut(s)	45, 96
TfiI	GAWTC	1 cut(s)	69
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	239
TspRI	CASTG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.