Rh4AG247900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008178
Physical Location & Seq
Forward (+)
56078779 .. 56079093
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG247900.1

Sequence Viewer

Length: 219 bp
ATGACGTCGTCTCCGGCGGCCAAACTCCCTTGGCTTAAATCGAGCCTTCACTTTCCAGCACCAATGGTAAGAGGACCAAGAGGGAGGTCATCGGGCTCAAAGTGGAGGGTCCGAAGATCAGAATTAGAGCTCTGGTCGACGGCGGAGGTGAAATCTGCTTTGGTCGAGAGTAGTGGAGGCGCTCATGTGAATACTGAAAAGAAAGACAAACGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

11.0

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 137
AciI CCGC 2 cut(s) 17, 143
AclI AACGTT 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 15
AoxI GGCC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 74, 109
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 2 cut(s) 74, 109
BanII GRGCYC 2 cut(s) 98, 132
Bbv12I GWGCWC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 74, 109
BmgT120I GGNCC 2 cut(s) 74, 109
BmiI GGNNCC 1 cut(s) 110
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 29
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 98, 132
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 17, 143
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 5
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 20
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 74, 109
CviAII CATG 1 cut(s) 185
CviJI RGCY 5 cut(s) 20, 34, 45, 96, 130
CviKI_1 RGCY 5 cut(s) 20, 34, 45, 96, 130
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 98, 132
Eco47I GGWCC 2 cut(s) 74, 109
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 98, 132
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 188
FaiI YATR 1 cut(s) 186
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 98, 132
Fsp4HI GCNGC 1 cut(s) 18
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 113, 121
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 2 cut(s) 10, 142
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 5, 211
HpySE526I ACGT 2 cut(s) 5, 211
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 27, 69, 118
MaeII ACGT 2 cut(s) 5, 211
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 98, 132
MluCI AATT 1 cut(s) 122
MnlI CCTC 6 cut(s) 65, 74, 78, 99, 139, 170
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 14
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 74, 109
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 74, 109
SduI GDGCHC 2 cut(s) 98, 132
SetI ASST 5 cut(s) 8, 89, 132, 150, 214
SgeI CNNG 9 cut(s) 26, 42, 54, 68, 90, 105, 145, 178, 197
SinI GGWCC 2 cut(s) 74, 109
Sse9I AATT 1 cut(s) 122
SsiI CCGC 2 cut(s) 17, 143
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 1 cut(s) 29
TaiI ACGT 2 cut(s) 8, 214
TaqI TCGA 3 cut(s) 41, 137, 165
TasI AATT 1 cut(s) 122
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 74, 109
XmiI GTMKAC 1 cut(s) 137
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.