Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

5173387 .. 5174187

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAATTCCGAAAAATCGAAGTTGAACTCCAGCGAAGAGGGGAAAAGGGTTGTATTGTTTGGACCTAAGACGCCGACTTCGCTTTTGGAGCTCGAAAATGAGCTTTATGAATGCCAATACAATATGGGGCTACTCCTGATTGAGAAAAATGAGTGGACTTCTAGGCAGGAAGAATTCGGGCAGCCAATTGGATTGCAACTTCTGAAGTTGAACTCCGGCGAGGAGGGTAAAGAGATTGCAGAAATTAAGTTTACTGCTGATTCGAAGTTGGCTGAGTTAAATGCTTTAGTTGCTAGCATAGAAGAAAAATCACTGCAGTTAGAGGCAAAGCCAGCGACCATGATGGGCGGAGGCGGGCTGGAAGTCGGATTTCTAATGGAGTTCGAATTTGGGGCTGCACGCCTGCACGGGACCTTCTTCCGATGTGCTGTTGCGGAAGAGGATGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.64

Weight (kDa)

4.57

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	348, 354, 434
AcsI	RAATTY	3 cut(s)	4, 173, 386
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	25, 211
AluBI	AGCT	2 cut(s)	91, 103
AluI	AGCT	2 cut(s)	91, 103
Alw21I	GWGCWC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	181, 395
ApoI	RAATTY	3 cut(s)	4, 173, 386
ArsI	GACNNNNNNTTYG	4 cut(s)	61, 67, 93, 99
AspS9I	GGNCC	2 cut(s)	62, 411
AsuII	TTCGAA	2 cut(s)	263, 384
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	62, 411
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	193, 382
BccI	CCATC	1 cut(s)	337
BfaI	CTAG	2 cut(s)	162, 294
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	2 cut(s)	182, 396
BlsI	GCNGC	2 cut(s)	183, 397
Bme18I	GGWCC	2 cut(s)	62, 411
BmgT120I	GGNCC	2 cut(s)	62, 411
BmiI	GGNNCC	1 cut(s)	412
BmtI	GCTAGC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	13
Bpu14I	TTCGAA	2 cut(s)	263, 384
BsaHI	GRCGYC	1 cut(s)	71
BseGI	GGATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	193, 382
BsgI	GTGCAG	2 cut(s)	381, 389
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	116
Bsp119I	TTCGAA	2 cut(s)	263, 384
Bsp1286I	GDGCHC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	348, 354, 434
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	318
BspOI	GCTAGC	1 cut(s)	297
BspT104I	TTCGAA	2 cut(s)	263, 384
BssNI	GRCGYC	1 cut(s)	71
Bst6I	CTCTTC	2 cut(s)	30, 432
BstACI	GRCGYC	1 cut(s)	71
BstBI	TTCGAA	2 cut(s)	263, 384
BstC8I	GCNNGC	5 cut(s)	295, 333, 356, 400, 404
BstDEI	CTNAG	2 cut(s)	66, 273
BstF5I	GGATG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 88, 290, 332
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	193, 382
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	5 cut(s)	295, 333, 356, 400, 404
Cfr13I	GGNCC	2 cut(s)	62, 411
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	8 cut(s)	91, 103, 130, 184, 272, 331, 358, 395
CviKI_1	RGCY	8 cut(s)	91, 103, 130, 184, 272, 331, 358, 395
DdeI	CTNAG	2 cut(s)	66, 273
Eam1104I	CTCTTC	2 cut(s)	30, 432
EarI	CTCTTC	2 cut(s)	30, 432
EciI	GGCGGA	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	62, 411
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRI	GAATTC	2 cut(s)	4, 173
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	1 cut(s)	343
FaiI	YATR	4 cut(s)	108, 125, 299, 341
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	2 cut(s)	182, 396
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	182, 396
FspBI	CTAG	2 cut(s)	162, 294
GluI	GCNGC	2 cut(s)	182, 396
GsuI	CTGGAG	1 cut(s)	13
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	156, 252
Hpy188I	TCNGA	4 cut(s)	10, 204, 368, 422
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	156, 252
HpyAV	CCTTC	1 cut(s)	424
HpyCH4V	TGCA	5 cut(s)	196, 239, 316, 398, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 88, 290, 332
HpyF3I	CTNAG	2 cut(s)	66, 273
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	43, 149, 152, 229, 344, 345, 416
Lsp1109I	GCAGC	2 cut(s)	193, 382
MaeI	CTAG	2 cut(s)	162, 294
MboII	GAAGA	5 cut(s)	47, 182, 314, 409, 449
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	5 cut(s)	4, 173, 186, 243, 386
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	31, 214, 217, 316, 344, 433
MseI	TTAA	2 cut(s)	246, 278
MspI	CCGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	79, 88, 290, 332
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	412
NspV	TTCGAA	2 cut(s)	263, 384
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	183, 397
PpuMI	RGGWCCY	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	62, 411
PspPPI	RGGWCCY	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	246, 278
SatI	GCNGC	2 cut(s)	182, 396
Sau96I	GGNCC	2 cut(s)	62, 411
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	67, 93, 105, 416
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	2 cut(s)	263, 384
SinI	GGWCC	2 cut(s)	62, 411
Sse9I	AATT	5 cut(s)	4, 173, 186, 243, 386
SsiI	CCGC	3 cut(s)	348, 354, 434
SspMI	CTAG	2 cut(s)	162, 294
SstI	GAGCTC	1 cut(s)	93
TaqI	TCGA	4 cut(s)	17, 93, 263, 384
TasI	AATT	5 cut(s)	4, 173, 186, 243, 386
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	246, 278
Tru9I	TTAA	2 cut(s)	246, 278
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	181, 395
TspDTI	ATGAA	2 cut(s)	17, 123
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	62, 411
XapI	RAATTY	3 cut(s)	4, 173, 386
XspI	CTAG	2 cut(s)	162, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.