Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

38370871 .. 38371173

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAATTTCGGCAAGTCGAAGTTGAACTCCGGCGAGGAGGGGAAATGGGCTGTCTTGTTTGAACCCACGACGCCAGCTTCGAGTCTTTTAGAGAATGGTGAGGCGGCTACAGACCATGATGGGCGGCGGCGGGATCGAAGTTGGATTTCGAATGGAGTTCGAATTTGGGGCTGCACGCCTGCACGGGACCTTCTTCCGATGTTTTGTTGCGGCGGGATGGCAGAGGTGAGGCTGGGGTCGAAGTTCTTGTTCACTGATGTTTTTGTACACGTGATCCCGCGATCGAAGGTTCTTGTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

8.59

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 278
AclWI	GGATC	2 cut(s)	141, 268
AcsI	RAATTY	2 cut(s)	4, 162
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	25, 62
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	2 cut(s)	141, 268
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	4, 162
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	110, 238
AsuII	TTCGAA	2 cut(s)	149, 160
AvaII	GGWCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	113, 211
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
BlsI	GCNGC	5 cut(s)	106, 126, 129, 173, 212
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	188
Bpu14I	TTCGAA	2 cut(s)	149, 160
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	71
BseGI	GGATG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	2 cut(s)	157, 165
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
Bsp119I	TTCGAA	2 cut(s)	149, 160
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	133, 273, 281
BspACI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 278
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	141, 268
BspT104I	TTCGAA	2 cut(s)	149, 160
BsrGI	TGTACA	1 cut(s)	265
BssMI	GATC	3 cut(s)	133, 273, 281
BssNI	GRCGYC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	2 cut(s)	149, 160
BstC8I	GCNNGC	3 cut(s)	75, 176, 180
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	3 cut(s)	136, 276, 284
BstMBI	GATC	3 cut(s)	133, 273, 281
BstMCI	CGRYCG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	252, 298
Cac8I	GCNNGC	3 cut(s)	75, 176, 180
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	5 cut(s)	50, 77, 107, 171, 232
CviKI_1	RGCY	5 cut(s)	50, 77, 107, 171, 232
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	3 cut(s)	135, 275, 283
DpnII	GATC	3 cut(s)	133, 273, 281
Eco47I	GGWCC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	187
FaeI	CATG	1 cut(s)	119
FaiI	YATR	1 cut(s)	117
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	115
FauI	CCCGC	3 cut(s)	123, 206, 285
Fnu4HI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
GluI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
GsaI	CCCAGC	1 cut(s)	236
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	110, 238
Hpy166II	GTNNAC	3 cut(s)	252, 268, 298
Hpy188I	TCNGA	1 cut(s)	198
Hpy8I	GTNNAC	3 cut(s)	252, 268, 298
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	200, 280
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	174, 182
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	133, 273, 281
LpnPI	CCDG	4 cut(s)	43, 87, 192, 218
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	270
MalI	GATC	3 cut(s)	135, 275, 283
MboI	GATC	3 cut(s)	133, 273, 281
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	2 cut(s)	4, 162
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	5 cut(s)	28, 31, 94, 217, 222
MspI	CCGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	280
NdeII	GATC	3 cut(s)	133, 273, 281
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	188
NspV	TTCGAA	2 cut(s)	149, 160
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	106, 126, 129, 173, 212
Ple19I	CGATCG	1 cut(s)	284
PleI	GAGTC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SatI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
Sau3AI	GATC	3 cut(s)	133, 273, 281
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	91
SetI	ASST	5 cut(s)	79, 192, 228, 273, 291
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	2 cut(s)	149, 160
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	4, 162
SsiI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 278
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	7 cut(s)	17, 80, 136, 149, 160, 239, 284
TasI	AATT	2 cut(s)	4, 162
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	4 cut(s)	107, 127, 130, 213
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	4, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.