Rh6BG314100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009743
Physical Location & Seq
Forward (+)
54433683 .. 54434003
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG314100.1

Sequence Viewer

Length: 321 bp
ATGGCTAGCGGTGGTGCTGTGGGGCAGTGTGTGTCGATGGCGGGGCTCCTCCCGGCATCTAATCCAGCAGCGTTGGTCTCAGTGCTTCAAGACCCTCCCTTTCGAGGAAGCTCTACGGTTTGGCTCATTGATCCGGGTGGCGAGTTTGTGGTTGGCAGCAGAGATGGCAAGACCGACGCTGCAGACGGCAGGGTTGCTGGCGGTGGAGGTGTCGCTGGCTTGGGACCTATGGCTGTTGGCGGCTCGGGTCCATGGTGGCTAGGGTTTACTATGGGCCAGGGGCTTTTGGTTGGCTATTGGGCTAGGGAGCCCGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.45

Weight (kDa)

4.41

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 41, 201, 240
AclWI GGATC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 3 cut(s) 68, 156, 179
AspS9I GGNCC 3 cut(s) 224, 248, 274
AsuC2I CCSGG 2 cut(s) 53, 135
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 224, 248
BanII GRGCYC 2 cut(s) 48, 312
BbvI GCAGC 3 cut(s) 80, 166, 168
BccI CCATC 2 cut(s) 31, 158
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 2 cut(s) 53, 135
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 6, 260, 303
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 4 cut(s) 69, 157, 180, 241
BlsI GCNGC 4 cut(s) 70, 158, 181, 242
Bme1390I CCNGG 3 cut(s) 53, 135, 278
Bme18I GGWCC 2 cut(s) 224, 248
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 224, 248, 274
BmiI GGNNCC 4 cut(s) 47, 225, 249, 309
BmrFI CCNGG 3 cut(s) 53, 135, 278
BmsI GCATC 1 cut(s) 65
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 53, 135
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 251, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 251, 277
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 80, 166, 168
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 53, 134
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 48, 312
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 4 cut(s) 9, 41, 201, 240
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 47, 225, 249, 309
BspMAI CTGCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 251, 277
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 7, 199, 217
BstDEI CTNAG 1 cut(s) 79
BstDSI CCRYGG 1 cut(s) 251
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 51, 133, 276
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 80, 166, 168
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 87
Cac8I GCNNGC 3 cut(s) 7, 199, 217
Cfr13I GGNCC 3 cut(s) 224, 248, 274
CseI GACGC 1 cut(s) 185
CviAII CATG 1 cut(s) 252
DdeI CTNAG 1 cut(s) 79
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 2 cut(s) 48, 312
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 224, 248
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 2 cut(s) 48, 312
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 255
FaiI YATR 3 cut(s) 230, 253, 272
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 251
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 69, 157, 180, 241
FriOI GRGCYC 2 cut(s) 48, 312
Fsp4HI GCNGC 4 cut(s) 69, 157, 180, 241
FspBI CTAG 3 cut(s) 6, 260, 303
GluI GCNGC 4 cut(s) 69, 157, 180, 241
HaeIII GGCC 1 cut(s) 276
HapII CCGG 2 cut(s) 53, 134
HgaI GACGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 255
HpaII CCGG 2 cut(s) 53, 134
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 51, 307
LpnPI CCDG 8 cut(s) 66, 78, 147, 175, 183, 201, 263, 290
Lsp1109I GCAGC 3 cut(s) 80, 166, 168
LweI GCATC 1 cut(s) 65
MaeI CTAG 3 cut(s) 6, 260, 303
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 48, 312
MnlI CCTC 4 cut(s) 59, 98, 105, 200
MspI CCGG 2 cut(s) 53, 134
MspR9I CCNGG 3 cut(s) 53, 135, 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 165
NciI CCSGG 2 cut(s) 53, 135
NcoI CCATGG 1 cut(s) 251
NdeII GATC 1 cut(s) 130
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 4 cut(s) 47, 225, 249, 309
PkrI GCNGC 4 cut(s) 70, 158, 181, 242
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 47, 225, 249, 309
PspPI GGNCC 3 cut(s) 224, 248, 274
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 184
SatI GCNGC 4 cut(s) 69, 157, 180, 241
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 224, 248, 274
ScrFI CCNGG 3 cut(s) 53, 135, 278
SduI GDGCHC 2 cut(s) 48, 312
SetI ASST 3 cut(s) 113, 211, 229
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 224, 248
SsiI CCGC 4 cut(s) 9, 41, 201, 240
SspMI CTAG 3 cut(s) 6, 260, 303
StyD4I CCNGG 3 cut(s) 51, 133, 276
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 35, 103
TaqII GACCGA 1 cut(s) 188
TauI GCSGC 1 cut(s) 243
TscAI CASTG 2 cut(s) 32, 87
TseI GCWGC 3 cut(s) 68, 156, 179
TspRI CASTG 2 cut(s) 32, 87
VpaK11BI GGWCC 2 cut(s) 224, 248
XspI CTAG 3 cut(s) 6, 260, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.