Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Reverse (-)

65638115 .. 65638474

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG488000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATTCCGTCAAGTCGAAGTTGAACTCCGGCGATGAGGGGAAAGGGGTTGTCTTGTTTGAACCCACGACGCCGGCTTCGAGTCTTTTAGAGAATGGTGAGGCGGCTACAGACCATGATGGGCGGCGGCGGGATCGAAGTTGGATTTCGAATGGAGTTCGAATTTGGGGCTGCACGCCTGCACGGGACCTTCTTCCGATGTTTTGTTGCGGCGGGTTGGCAGAGGTGAGGCTGGGATCGAAGTTGTTGTTCACTGATGTTTTTGTACACGTGATCCGCGATCGAAGTTCTTGTTCACTGACCTTGGTTTGGATCAGATTGTCCAGATCTAAATCTACTGCAAACATAGTCATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.05

Weight (kDa)

9.16

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	279
AciI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 277
AclWI	GGATC	4 cut(s)	141, 244, 268, 320
AcsI	RAATTY	2 cut(s)	4, 162
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	25, 62
AlwI	GGATC	4 cut(s)	141, 244, 268, 320
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	4, 162
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	110, 238
AsuII	TTCGAA	2 cut(s)	149, 160
AvaII	GGWCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
BlsI	GCNGC	5 cut(s)	106, 126, 129, 173, 212
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	188
Bpu14I	TTCGAA	2 cut(s)	149, 160
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	2 cut(s)	157, 165
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	30, 74
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	200
Bsp119I	TTCGAA	2 cut(s)	149, 160
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
BspACI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 277
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	4 cut(s)	141, 244, 268, 320
BspT104I	TTCGAA	2 cut(s)	149, 160
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	2 cut(s)	149, 160
BstC8I	GCNNGC	3 cut(s)	75, 176, 180
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	6 cut(s)	136, 239, 276, 283, 315, 329
BstMBI	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
BstMCI	CGRYCG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BtgZI	GCGATG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	252, 296
Cac8I	GCNNGC	3 cut(s)	75, 176, 180
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	116, 352
CviJI	RGCY	4 cut(s)	77, 107, 171, 232
CviKI_1	RGCY	4 cut(s)	77, 107, 171, 232
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	6 cut(s)	135, 238, 275, 282, 314, 328
DpnII	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	119, 355
FaiI	YATR	3 cut(s)	117, 347, 353
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	115, 351
FauI	CCCGC	2 cut(s)	123, 206
Fnu4HI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
Fsp4HI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
GluI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
GsaI	CCCAGC	1 cut(s)	236
HapII	CCGG	2 cut(s)	30, 74
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	119, 355
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	30, 74
HphI	GGTGA	2 cut(s)	110, 238
Hpy166II	GTNNAC	3 cut(s)	252, 268, 296
Hpy188I	TCNGA	2 cut(s)	198, 317
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	3 cut(s)	252, 268, 296
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	174, 182, 341
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	119, 355
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
LpnPI	CCDG	5 cut(s)	43, 87, 192, 218, 337
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	270
MalI	GATC	6 cut(s)	135, 238, 275, 282, 314, 328
MboI	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	2 cut(s)	4, 162
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	31, 94, 217, 222
MroNI	GCCGGC	1 cut(s)	73
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	30, 74
MvnI	CGCG	1 cut(s)	279
NaeI	GCCGGC	1 cut(s)	75
NdeII	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	119, 355
NlaIV	GGNNCC	1 cut(s)	188
NspV	TTCGAA	2 cut(s)	149, 160
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 276
PdiI	GCCGGC	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	106, 126, 129, 173, 212
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
RseI	CAYNNNNRTG	1 cut(s)	350
SatI	GCNGC	5 cut(s)	105, 125, 128, 172, 211
Sau3AI	GATC	6 cut(s)	133, 236, 273, 280, 312, 326
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	91
SetI	ASST	4 cut(s)	192, 228, 273, 305
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	2 cut(s)	149, 160
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	4, 162
SsiI	CCGC	7 cut(s)	104, 124, 127, 130, 210, 213, 277
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	7 cut(s)	17, 80, 136, 149, 160, 239, 283
TasI	AATT	2 cut(s)	4, 162
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	4 cut(s)	107, 127, 130, 213
TscAI	CASTG	2 cut(s)	259, 303
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	259, 303
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	2 cut(s)	4, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.