Rh4BG099300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009743
Physical Location & Seq
Forward (+)
16960555 .. 16960785
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG099300.1

Sequence Viewer

Length: 231 bp
ATGATAGGGTCCCTCCCGGAATCCAATCTAGTGGCGGCGGTCTCGGTGCTTCAAGATCCTCCCTTTTATGGAGGTTATCAGTTTTGGCCCATTAATTTGAGTGACGGAGCTATGGTTGGTAGCAAAGAAGGAGACGACGGTGCCGCTGGTGACAAGGTTATTGGTGGTGGAGATGCGGTTGGTGTCGAAACTATGGTTGCTGGCTACGCTGAGGATAGTGGCGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.55

Weight (kDa)

4.05

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AciI CCGC 4 cut(s) 35, 38, 144, 176
AclWI GGATC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 46, 126
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 224
AseI ATTAAT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 9, 87
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 46, 126
BfaI CTAG 2 cut(s) 29, 229
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 36, 144, 225
BlsI GCNGC 3 cut(s) 37, 145, 226
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 9, 87
BmiI GGNNCC 3 cut(s) 10, 11, 142
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 46, 126
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 88
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 4 cut(s) 35, 38, 144, 176
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 10, 11, 142
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 46
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 2 cut(s) 46, 126
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 9, 87
CviJI RGCY 3 cut(s) 88, 110, 204
CviKI_1 RGCY 3 cut(s) 88, 110, 204
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 126
FaiI YATR 3 cut(s) 69, 113, 194
Fnu4HI GCNGC 3 cut(s) 36, 144, 225
Fsp4HI GCNGC 3 cut(s) 36, 144, 225
FspBI CTAG 2 cut(s) 29, 229
GlaI GCGC 1 cut(s) 223
GluI GCNGC 3 cut(s) 36, 144, 225
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 224
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 210
HspAI GCGC 1 cut(s) 222
KflI GGGWCCC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 30, 132, 186
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 29, 229
MaeIII GTNAC 2 cut(s) 101, 149
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 94
MnlI CCTC 4 cut(s) 23, 65, 69, 205
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 17
NdeII GATC 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 10, 11, 142
NmuCI GTSAC 2 cut(s) 101, 149
PfeI GAWTC 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 3 cut(s) 37, 145, 226
PpuMI RGGWCCY 1 cut(s) 9
PshBI ATTAAT 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 10, 11, 142
PspPI GGNCC 2 cut(s) 9, 87
PspPPI RGGWCCY 1 cut(s) 9
PsuI RGATCY 1 cut(s) 55
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 3 cut(s) 36, 144, 225
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 9, 87
ScrFI CCNGG 1 cut(s) 17
SetI ASST 3 cut(s) 76, 112, 159
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 8 cut(s) 28, 29, 41, 55, 65, 159, 166, 213
SinI GGWCC 1 cut(s) 9
Sse9I AATT 1 cut(s) 94
SsiI CCGC 4 cut(s) 35, 38, 144, 176
SspMI CTAG 2 cut(s) 29, 229
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 94
TauI GCSGC 2 cut(s) 38, 146
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseFI GTSAC 2 cut(s) 101, 149
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 101, 149
TspGWI ACGGA 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 9
VspI ATTAAT 1 cut(s) 93
XspI CTAG 2 cut(s) 29, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.