Rh1AG238600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009743
Physical Location & Seq
Reverse (-)
44884914 .. 44885228
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG238600.1

Sequence Viewer

Length: 315 bp
ATGGCTATCGGTGGTACTGCGGGACAGTGTGTGTCGATGGCGGGGCTCCTCCCGGTGTCGGATTGGGCGGTGGCTGTCTCAGTGCTTCAAGACCCTCCCTTTCGAGGATGCTCTACGGTTTGGCTCACTGATCAGGGTGGCGATGTTGTGGTCGGCAGCGGAGATGACAAGACCAGAGCTGCAGACGGCAGGGTTGCTGGTGGTGGAGGTGTCGCTGGCTTGGGACCTATGGCTGCTGGCGGCTCGGCTCCATGGTGGCTAGGGTTTGCCATGGGCCATGGGCTTTTGGTTGGAGTTTGGTTGGCTATTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.15

Weight (kDa)

4.47

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 20, 41, 68, 159, 240
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 58, 104
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 3 cut(s) 156, 179, 233
AspS9I GGNCC 2 cut(s) 224, 274
AsuC2I CCSGG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 48
BbvI GCAGC 3 cut(s) 166, 168, 220
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 202
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 2 cut(s) 260, 313
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 4 cut(s) 157, 180, 234, 241
BlsI GCNGC 4 cut(s) 158, 181, 235, 242
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 224, 274
BmiI GGNNCC 3 cut(s) 47, 225, 249
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 251, 270, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 104
BseDI CCNNGG 3 cut(s) 251, 270, 277
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 58, 104
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 166, 168, 220
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 36, 237
BslI CCNNNNNNNGG 2 cut(s) 58, 104
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 36, 237
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 3 cut(s) 251, 270, 277
BspACI CCGC 5 cut(s) 20, 41, 68, 159, 240
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 47, 225, 249
BspMAI CTGCAG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 251, 270, 277
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 3 cut(s) 251, 270, 277
Bst4CI ACNGT 2 cut(s) 27, 118
BstC8I GCNNGC 2 cut(s) 217, 238
BstDEI CTNAG 1 cut(s) 79
BstDSI CCRYGG 3 cut(s) 251, 270, 277
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 166, 168, 220
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 3 cut(s) 251, 270, 277
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 32, 87, 126
Cac8I GCNNGC 2 cut(s) 217, 238
Cfr13I GGNCC 2 cut(s) 224, 274
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 252, 271, 278
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 79
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 251, 270, 277
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 3 cut(s) 251, 270, 277
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 3 cut(s) 251, 270, 277
FaeI CATG 3 cut(s) 255, 274, 281
FaiI YATR 4 cut(s) 230, 253, 272, 279
FaqI GGGAC 2 cut(s) 36, 237
FatI CATG 3 cut(s) 251, 270, 277
FauI CCCGC 2 cut(s) 13, 34
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 157, 180, 234, 241
FokI GGATG 1 cut(s) 120
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 157, 180, 234, 241
FspBI CTAG 2 cut(s) 260, 313
GluI GCNGC 4 cut(s) 157, 180, 234, 241
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 53
Hin1II CATG 3 cut(s) 255, 274, 281
HpaII CCGG 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 27, 118
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 79
Hsp92II CATG 3 cut(s) 255, 274, 281
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 51, 253
LpnPI CCDG 7 cut(s) 66, 119, 175, 183, 187, 201, 222
Lsp1109I GCAGC 3 cut(s) 166, 168, 220
LweI GCATC 1 cut(s) 98
MaeI CTAG 2 cut(s) 260, 313
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 39, 271
MnlI CCTC 4 cut(s) 59, 98, 105, 200
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 53
NcoI CCATGG 3 cut(s) 251, 270, 277
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 255, 274, 281
NlaIV GGNNCC 3 cut(s) 47, 225, 249
NmeAIII GCCGAG 1 cut(s) 224
PkrI GCNGC 4 cut(s) 158, 181, 235, 242
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 47, 225, 249
PspPI GGNCC 2 cut(s) 224, 274
PspPPI RGGWCCY 1 cut(s) 224
PstI CTGCAG 1 cut(s) 184
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 4 cut(s) 157, 180, 234, 241
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 224, 274
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 181, 211, 229
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 224
SsiI CCGC 5 cut(s) 20, 41, 68, 159, 240
SspMI CTAG 2 cut(s) 260, 313
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 3 cut(s) 251, 270, 277
TaaI ACNGT 2 cut(s) 27, 118
TaqI TCGA 2 cut(s) 35, 103
TauI GCSGC 1 cut(s) 243
TscAI CASTG 3 cut(s) 32, 87, 133
TseI GCWGC 3 cut(s) 156, 179, 233
TspRI CASTG 3 cut(s) 32, 87, 133
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 2 cut(s) 260, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.