Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Reverse (-)

58166690 .. 58185536

Gene Structure 18847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATTCCGGCAAGTCGAAGTTGAACTTCGGCGAGGAGGGGAAAGGAGCTGTCTTGTTTGAACCCACGACGCCGACTTCGAGTCTTTTAGAGAATGGTGTGGCGGCGGGATCGAAGTTGGATTTCGAATGGAGTTCGAATTTGGGGCTGCACGCCTGCACGGGACCTTCTTCCGATGTTTTGTTGAGGCAGGCTGGCAGAGCCGTCAGGCCGATCTTGCTCGTTTCCTCCCAGTTATCGGATCTTCGATCCGCTTCCCGAACTCGGATCAATTCCTCAGTCTGGATTCCTTCTCTGCTTCCTTTTTTGCTTCCTTATTTTCCTCGATTTCCAATCCAATTGTTAGGTTTCGATATGGTTTTCTTGATGCTGTCAGTGGCCATGGCTATCGGTGGTTTTGCGGGGCAGTGCGTGGCGATGGTAGGGGTCCTCCCATTGTCTAATCTGGCAACAACGGTCTCAGTGCTTCAGAACCCTCCCTTTCGAGTTTGGCGCATTGATCCGGGAGGCGACGTTATGGTTGGCGGCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.91

Weight (kDa)

9.18

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	104, 107, 252, 401, 525, 528
AclWI	GGATC	5 cut(s)	118, 243, 249, 275, 494
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	4, 139
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	238, 264, 282
AgsI	TTSAA	2 cut(s)	25, 62
AhdI	GACNNNNNGTC	1 cut(s)	81
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	5 cut(s)	118, 243, 249, 275, 494
AoxI	GGCC	2 cut(s)	209, 378
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	2 cut(s)	4, 139
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	164, 427
AsuC2I	CCSGG	1 cut(s)	504
AsuII	TTCGAA	2 cut(s)	126, 137
AvaII	GGWCC	2 cut(s)	164, 427
BalI	TGGCCA	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	463
BisI	GCNGC	3 cut(s)	105, 149, 526
BlsI	GCNGC	3 cut(s)	106, 150, 527
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	164, 427
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	164, 427
BmiI	GGNNCC	2 cut(s)	165, 428
BmrFI	CCNGG	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	226
Bpu14I	TTCGAA	2 cut(s)	126, 137
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 264, 282
Bse1I	ACTGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	238, 264, 282
BseMII	CTCAG	2 cut(s)	291, 474
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	2 cut(s)	134, 142
BshFI	GGCC	2 cut(s)	211, 380
BsiSI	CCGG	2 cut(s)	9, 503
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	238, 264, 282
BsmAI	GTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	211, 380
Bso31I	GGTCTC	1 cut(s)	463
Bsp119I	TTCGAA	2 cut(s)	126, 137
Bsp143I	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	6 cut(s)	104, 107, 252, 401, 525, 528
BspANI	GGCC	2 cut(s)	211, 380
BspCNI	CTCAG	2 cut(s)	290, 473
BspLI	GGNNCC	2 cut(s)	165, 428
BspPI	GGATC	5 cut(s)	118, 243, 249, 275, 494
BspT104I	TTCGAA	2 cut(s)	126, 137
BspTNI	GGTCTC	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	71
BstBI	TTCGAA	2 cut(s)	126, 137
BstC8I	GCNNGC	4 cut(s)	153, 157, 192, 196
BstDEI	CTNAG	2 cut(s)	277, 460
BstDSI	CCRYGG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	6 cut(s)	113, 216, 244, 251, 270, 502
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 217
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	211, 380
BtgI	CCRYGG	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	431
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	3 cut(s)	381, 413, 468
Cac8I	GCNNGC	4 cut(s)	153, 157, 192, 196
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	164, 427
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	7 cut(s)	50, 148, 194, 203, 211, 380, 386
CviKI_1	RGCY	7 cut(s)	50, 148, 194, 203, 211, 380, 386
DdeI	CTNAG	2 cut(s)	277, 460
DpnI	GATC	6 cut(s)	112, 215, 243, 250, 269, 501
DpnII	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
DriI	GACNNNNNGTC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	378
Eam1105I	GACNNNNNGTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	463
Eco47I	GGWCC	2 cut(s)	164, 427
Eco57I	CTGAAG	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	164, 427
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	385
FaiI	YATR	3 cut(s)	356, 383, 518
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	381
FauI	CCCGC	2 cut(s)	100, 394
Fnu4HI	GCNGC	3 cut(s)	105, 149, 526
Fsp4HI	GCNGC	3 cut(s)	105, 149, 526
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	3 cut(s)	105, 149, 526
HaeIII	GGCC	2 cut(s)	211, 380
HapII	CCGG	2 cut(s)	9, 503
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	82, 286
HpaII	CCGG	2 cut(s)	9, 503
Hpy188I	TCNGA	4 cut(s)	175, 241, 267, 471
Hpy188III	TCNNGA	3 cut(s)	258, 283, 364
Hpy99I	CGWCG	2 cut(s)	73, 515
HpyAV	CCTTC	2 cut(s)	177, 300
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	2 cut(s)	151, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 217
HpyF3I	CTNAG	2 cut(s)	277, 460
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	9 cut(s)	22, 169, 176, 180, 193, 245, 268, 431, 516
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	513
MalI	GATC	6 cut(s)	112, 215, 243, 250, 269, 501
MboI	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
MboII	GAAGA	2 cut(s)	162, 236
MfeI	CAATTG	1 cut(s)	338
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	4 cut(s)	4, 139, 271, 338
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	28, 31, 180, 238, 286, 333, 440, 486, 500
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	2 cut(s)	9, 503
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	200, 217
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	165, 428
NspV	TTCGAA	2 cut(s)	126, 137
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	106, 150, 527
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PpuMI	RGGWCCY	2 cut(s)	164, 427
Psp5II	RGGWCCY	2 cut(s)	164, 427
PspN4I	GGNNCC	2 cut(s)	165, 428
PspPI	GGNCC	2 cut(s)	164, 427
PspPPI	RGGWCCY	2 cut(s)	164, 427
PsuI	RGATCY	1 cut(s)	241
SatI	GCNGC	3 cut(s)	105, 149, 526
Sau3AI	GATC	6 cut(s)	110, 213, 241, 248, 267, 499
Sau96I	GGNCC	2 cut(s)	164, 427
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	4 cut(s)	52, 169, 349, 516
SfaNI	GCATC	1 cut(s)	357
SfuI	TTCGAA	2 cut(s)	126, 137
SinI	GGWCC	2 cut(s)	164, 427
Sse9I	AATT	4 cut(s)	4, 139, 271, 338
SsiI	CCGC	6 cut(s)	104, 107, 252, 401, 525, 528
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	9 cut(s)	17, 80, 113, 126, 137, 247, 325, 351, 484
TasI	AATT	4 cut(s)	4, 139, 271, 338
TauI	GCSGC	2 cut(s)	107, 528
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	3 cut(s)	381, 413, 468
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	381, 413, 468
VpaK11BI	GGWCC	2 cut(s)	164, 427
XapI	RAATTY	2 cut(s)	4, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.