Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

84119436 .. 84122209

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGATCCGCTAAGAGATTGCAGAAATTAAGTTTACTGCAGATTGCTAATTCGAAGTTAGCCGAGGCAAATGCTTTAGTTGCTAGCATAGATGAAAAATCACTGCAGTTAGAGGCAAAGCCGGGGACCATAATGGGCGGCAGCGGGCTCGAAGTACGATTCAAATGGAGTTCGAATTTGGGCCTGCACACCTACACGGGACCTTCTTCCGATGTTTTGTTGCGGTGGGGTGGCAGAGAGGTGAGGTCGGGATCGAAAGAATCACATAAAGCTTATGGTAAAGGTGGTGTAAGAGGCGTCTCGGGAGATTTCGTAGGACTCGGGCCCTTTAGTACTTGCCGTGATGGTGGTGTCCCGGGAGATATGGTAGGACACGGTCCTGTCGGTACTCGCCGTAATGGTGGTGTTCCGGGAGATTTCGTAGGACTCAATCCTCGTACTCGCCGTAATGGTGGTGTCCCGGGAGATTTCGTAGGACTCGGGCCCTTTAGTACTTGTCGTGATGGTGGTGTCCCGGGAGATTTGGTAGGACTCGGTCCTGTAGGTACTCGCCGTAATGGTGGTGTTCCGGGAGATTTCGTAGGACTCGGTCTGTCGGTACTCGCCGTAAAGACGGTGTCCCGGGAGATTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

21.73

Weight (kDa)

10.13

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 138, 144, 223
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	7 cut(s)	156, 334, 388, 439, 493, 547, 600
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
AoxI	GGCC	3 cut(s)	181, 323, 482
ApaI	GGGCCC	2 cut(s)	327, 486
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	9 cut(s)	126, 181, 200, 323, 324, 377, 482, 483, 536
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	2 cut(s)	53, 173
AsuNHI	GCTAGC	1 cut(s)	83
AvaI	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
AvaII	GGWCC	4 cut(s)	126, 200, 377, 536
BaeGI	GKGCMC	2 cut(s)	327, 486
BanII	GRGCYC	3 cut(s)	150, 327, 486
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	338, 497
BceAI	ACGGC	5 cut(s)	324, 378, 429, 537, 590
BcgI	CGANNNNNNTGC	4 cut(s)	53, 87, 130, 164
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	3 cut(s)	38, 104, 540
BisI	GCNGC	2 cut(s)	139, 142
BlsI	GCNGC	2 cut(s)	140, 143
BmcAI	AGTACT	2 cut(s)	334, 493
Bme18I	GGWCC	4 cut(s)	126, 200, 377, 536
BmeT110I	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
BmgT120I	GGNCC	9 cut(s)	126, 181, 200, 323, 324, 377, 482, 483, 536
BmiI	GGNNCC	4 cut(s)	127, 201, 325, 484
BmtI	GCTAGC	1 cut(s)	87
Bpu14I	TTCGAA	2 cut(s)	53, 173
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	6 cut(s)	63, 122, 355, 460, 514, 621
BseDI	CCNNGG	6 cut(s)	63, 122, 355, 460, 514, 621
BseSI	GKGCMC	2 cut(s)	327, 486
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	3 cut(s)	183, 325, 484
BsiHKCI	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
BsiSI	CCGG	7 cut(s)	122, 356, 410, 461, 515, 569, 622
BslFI	GGGAC	6 cut(s)	139, 213, 338, 443, 497, 604
BsmAI	GTCTC	1 cut(s)	304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	6 cut(s)	139, 213, 338, 443, 497, 604
BsnI	GGCC	3 cut(s)	183, 325, 484
BsoBI	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
Bsp119I	TTCGAA	2 cut(s)	53, 173
Bsp120I	GGGCCC	2 cut(s)	323, 482
Bsp1286I	GDGCHC	3 cut(s)	150, 327, 486
Bsp143I	GATC	2 cut(s)	5, 251
BspACI	CCGC	4 cut(s)	9, 138, 144, 223
BspANI	GGCC	3 cut(s)	183, 325, 484
BspLI	GGNNCC	4 cut(s)	127, 201, 325, 484
BspMAI	CTGCAG	2 cut(s)	42, 108
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	2 cut(s)	53, 173
BssECI	CCNNGG	6 cut(s)	63, 122, 355, 460, 514, 621
BssMI	GATC	2 cut(s)	5, 251
BssNI	GRCGYC	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	377, 616
BstACI	GRCGYC	1 cut(s)	297
BstBI	TTCGAA	2 cut(s)	53, 173
BstC8I	GCNNGC	3 cut(s)	85, 146, 185
BstDEI	CTNAG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	8, 254
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	5, 251
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSFI	CTRYAG	3 cut(s)	38, 104, 540
BstSLI	GKGCMC	2 cut(s)	327, 486
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	183, 325, 484
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	3 cut(s)	85, 146, 185
Cfr13I	GGNCC	9 cut(s)	126, 181, 200, 323, 324, 377, 482, 483, 536
Cfr9I	CCCGGG	4 cut(s)	355, 460, 514, 621
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	7 cut(s)	155, 333, 387, 438, 492, 546, 599
CviJI	RGCY	7 cut(s)	62, 121, 148, 183, 272, 325, 484
CviKI_1	RGCY	7 cut(s)	62, 121, 148, 183, 272, 325, 484
CviQI	GTAC	7 cut(s)	155, 333, 387, 438, 492, 546, 599
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	7, 253
DpnII	GATC	2 cut(s)	5, 251
Eco24I	GRGCYC	3 cut(s)	150, 327, 486
Eco47I	GGWCC	4 cut(s)	126, 200, 377, 536
Eco88I	CYCGRG	7 cut(s)	301, 320, 355, 460, 479, 514, 621
EcoO109I	RGGNCCY	3 cut(s)	200, 324, 483
EcoT38I	GRGCYC	3 cut(s)	150, 327, 486
Esp3I	CGTCTC	1 cut(s)	304
FaiI	YATR	5 cut(s)	89, 131, 267, 276, 365
FaqI	GGGAC	6 cut(s)	139, 213, 338, 443, 497, 604
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	139, 142
FriOI	GRGCYC	3 cut(s)	150, 327, 486
Fsp4HI	GCNGC	2 cut(s)	139, 142
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	139, 142
HaeIII	GGCC	3 cut(s)	183, 325, 484
HapII	CCGG	7 cut(s)	122, 356, 410, 461, 515, 569, 622
HgaI	GACGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	7 cut(s)	159, 260, 318, 426, 477, 531, 585
HpaII	CCGG	7 cut(s)	122, 356, 410, 461, 515, 569, 622
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	249, 303, 500
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	377, 616
HpyCH4V	TGCA	4 cut(s)	22, 40, 106, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	5, 251
LpnPI	CCDG	9 cut(s)	135, 197, 369, 393, 423, 474, 528, 552, 582
Lsp1109I	GCAGC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	84
MalI	GATC	2 cut(s)	7, 253
MboI	GATC	2 cut(s)	5, 251
MboII	GAAGA	1 cut(s)	198
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	3 cut(s)	150, 327, 486
MluCI	AATT	3 cut(s)	26, 49, 175
MlyI	GAGTC	5 cut(s)	312, 420, 471, 525, 579
MnlI	CCTC	6 cut(s)	58, 106, 232, 237, 287, 444
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	7 cut(s)	122, 356, 410, 461, 515, 569, 622
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	5, 251
NheI	GCTAGC	1 cut(s)	83
NlaIV	GGNNCC	4 cut(s)	127, 201, 325, 484
NmeAIII	GCCGAG	1 cut(s)	88
NspV	TTCGAA	2 cut(s)	53, 173
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	159, 260
PflFI	GACNNNGTC	4 cut(s)	375, 534, 588, 616
PfoI	TCCNGGA	2 cut(s)	409, 568
PkrI	GCNGC	2 cut(s)	140, 143
PleI	GAGTC	5 cut(s)	312, 420, 471, 525, 579
PpsI	GAGTC	5 cut(s)	312, 420, 471, 525, 579
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	127, 201, 325, 484
PspOMI	GGGCCC	2 cut(s)	323, 482
PspPI	GGNCC	9 cut(s)	126, 181, 200, 323, 324, 377, 482, 483, 536
PspPPI	RGGWCCY	1 cut(s)	200
PstI	CTGCAG	2 cut(s)	42, 108
PsuI	RGATCY	1 cut(s)	5
PsyI	GACNNNGTC	4 cut(s)	375, 534, 588, 616
RsaI	GTAC	7 cut(s)	156, 334, 388, 439, 493, 547, 600
RsaNI	GTAC	7 cut(s)	155, 333, 387, 438, 492, 546, 599
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	139, 142
Sau3AI	GATC	2 cut(s)	5, 251
Sau96I	GGNCC	9 cut(s)	126, 181, 200, 323, 324, 377, 482, 483, 536
ScaI	AGTACT	2 cut(s)	334, 493
SchI	GAGTC	5 cut(s)	312, 420, 471, 525, 579
SduI	GDGCHC	3 cut(s)	150, 327, 486
SetI	ASST	7 cut(s)	194, 205, 243, 248, 274, 286, 547
SfcI	CTRYAG	3 cut(s)	38, 104, 540
SfuI	TTCGAA	2 cut(s)	53, 173
SinI	GGWCC	4 cut(s)	126, 200, 377, 536
SmaI	CCCGGG	4 cut(s)	357, 462, 516, 623
Sse9I	AATT	3 cut(s)	26, 49, 175
SsiI	CCGC	4 cut(s)	9, 138, 144, 223
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	377, 616
TaqI	TCGA	4 cut(s)	53, 150, 173, 254
TaqII	GACCGA	2 cut(s)	524, 578
TasI	AATT	3 cut(s)	26, 49, 175
TatI	WGTACW	2 cut(s)	332, 491
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	159, 260
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	108
TspMI	CCCGGG	4 cut(s)	355, 460, 514, 621
TspRI	CASTG	1 cut(s)	108
Tth111I	GACNNNGTC	4 cut(s)	375, 534, 588, 616
VpaK11BI	GGWCC	4 cut(s)	126, 200, 377, 536
XapI	RAATTY	1 cut(s)	175
XmaI	CCCGGG	4 cut(s)	355, 460, 514, 621
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	2 cut(s)	334, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.