Rroxscaffold_2G00118890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009743
Physical Location & Seq
Reverse (-)
50765032 .. 50787628
22597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118890.1

Sequence Viewer

Length: 636 bp
ATGAAGCCCAACCCGAAAGTTGACATCTCTCTCCGCAAAAGCTTGTCTTCAAATTTTGGGCCTCATCTGAATAAGTCAATTGGGCAATATCTAATCTCAAGCCCAAGTCGACAAGGGATGGGGTGCTCACGTACAATGCGCAGGTTAGTAGGGAAGTTGGTGTTAGCGGACCTAGGAGTGGAGAAGGCTGTGAGAGAAGGCTTGGCTAGCAATGACGTGTTGCCGGAGAGGAAGGTGGCGGAGGAGGAAGGCGAGCTTGCCGGTGCCCGGATTCGGTCATGGGTCGTCCGGAGAAGGAAGAAATCGGAGGAGGAAGAATCGGACCGAAGAGGAGAAAAGGATCGGGAAAGAAGAGAGAGAAAACTAGATCCAGGTGGCGAGTTTGTGGTTGGCAGCAGAGATGGCAAGAACGACGCCGCAGGCGGTGTTACCGGCAGCGGAGGTGTCGCCGGCTTCGGACCTATGGCTGCCGGCGCCTCAGGTCCATGGTGGCTAGGCTATTATGAGTGCTTATTTAACCAAATTTTAGACTTTGTACTGATCTGCATAGCAGGAGATAGAGTTGTGACAAATCCTCTTTGCAAGCCTTCAACATTGGAAGGTGCTTGTGAAGTTCTTAGTCGTGCTATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.93

Weight (kDa)

9.16

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 132
AccB1I GGYRCC 2 cut(s) 263, 473
AccI GTMKAC 1 cut(s) 109
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 6 cut(s) 34, 167, 239, 417, 423, 438
AclWI GGATC 2 cut(s) 348, 362
AcsI RAATTY 2 cut(s) 52, 522
AcyI GRCGYC 2 cut(s) 414, 474
AfaI GTAC 2 cut(s) 133, 537
AfiI CCNNNNNNNGG 3 cut(s) 178, 267, 273
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 51, 591
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 42, 256
AluI AGCT 2 cut(s) 42, 256
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 2 cut(s) 348, 362
Aor13HI TCCGGA 1 cut(s) 288
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 393, 435, 467
ApoI RAATTY 2 cut(s) 52, 522
AspA2I CCTAGG 1 cut(s) 172
AspLEI GCGC 2 cut(s) 141, 476
AspS9I GGNCC 5 cut(s) 59, 169, 322, 458, 482
AsuC2I CCSGG 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 206
AvaII GGWCC 4 cut(s) 169, 322, 458, 482
AvrII CCTAGG 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 2 cut(s) 263, 473
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 405, 447, 454
BccI CCATC 2 cut(s) 112, 395
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 1 cut(s) 268
BfaI CTAG 4 cut(s) 173, 207, 365, 494
BfoI RGCGCY 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 4 cut(s) 394, 417, 436, 468
BlnI CCTAGG 1 cut(s) 172
BlsI GCNGC 4 cut(s) 395, 418, 437, 469
Bme1390I CCNGG 2 cut(s) 268, 372
Bme18I GGWCC 4 cut(s) 169, 322, 458, 482
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 59, 169, 322, 458, 482
BmiI GGNNCC 2 cut(s) 265, 475
BmrFI CCNGG 2 cut(s) 268, 372
BmtI GCTAGC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 2 cut(s) 414, 474
BsaJI CCNNGG 2 cut(s) 172, 485
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 267, 273
Bse118I RCCGGY 4 cut(s) 260, 431, 449, 470
Bse21I CCTNAGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 217
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 172, 485
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 3 cut(s) 178, 267, 273
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 492
BseRI GAGGAG 3 cut(s) 257, 323, 345
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 405, 447, 454
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 2 cut(s) 263, 473
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 7 cut(s) 224, 261, 268, 289, 432, 450, 471
BslI CCNNNNNNNGG 3 cut(s) 178, 267, 273
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 128, 268
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 340, 367, 540
Bsp19I CCATGG 1 cut(s) 485
BspACI CCGC 6 cut(s) 34, 167, 239, 417, 423, 438
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 491
BspEI TCCGGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 265, 475
BspMI ACCTGC 1 cut(s) 132
BspOI GCTAGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 348, 362
BspT107I GGYRCC 2 cut(s) 263, 473
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 4 cut(s) 260, 431, 449, 470
BssAI RCCGGY 4 cut(s) 260, 431, 449, 470
BssECI CCNNGG 2 cut(s) 172, 485
BssMI GATC 3 cut(s) 340, 367, 540
BssNI GRCGYC 2 cut(s) 414, 474
BssT1I CCWWGG 2 cut(s) 172, 485
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 2 cut(s) 322, 346
BstACI GRCGYC 2 cut(s) 414, 474
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 7 cut(s) 208, 254, 258, 421, 451, 472, 584
BstDEI CTNAG 2 cut(s) 478, 617
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 2 cut(s) 141, 476
BstKTI GATC 3 cut(s) 343, 370, 543
BstMBI GATC 3 cut(s) 340, 367, 540
BstMWI GCNNNNNNNGC 3 cut(s) 207, 402, 473
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 266, 370
BstSLI GKGCMC 1 cut(s) 268
BstV1I GCAGC 3 cut(s) 405, 447, 454
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Bsu36I CCTNAGG 1 cut(s) 478
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 485
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 7 cut(s) 208, 254, 258, 421, 451, 472, 584
CfoI GCGC 2 cut(s) 141, 476
Cfr10I RCCGGY 4 cut(s) 260, 431, 449, 470
Cfr13I GGNCC 5 cut(s) 59, 169, 322, 458, 482
CpoI CGGWCCG 1 cut(s) 322
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 132, 536
CspI CGGWCCG 1 cut(s) 322
CviAII CATG 2 cut(s) 279, 486
CviQI GTAC 2 cut(s) 132, 536
DdeI CTNAG 2 cut(s) 478, 617
DinI GGCGCC 1 cut(s) 475
DpnI GATC 3 cut(s) 342, 369, 542
DpnII GATC 3 cut(s) 340, 367, 540
Eam1104I CTCTTC 2 cut(s) 322, 346
EarI CTCTTC 2 cut(s) 322, 346
EciI GGCGGA 1 cut(s) 254
Eco130I CCWWGG 2 cut(s) 172, 485
Eco47I GGWCC 4 cut(s) 169, 322, 458, 482
Eco81I CCTNAGG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 172, 485
EgeI GGCGCC 1 cut(s) 475
EheI GGCGCC 1 cut(s) 475
ErhI CCWWGG 2 cut(s) 172, 485
FaeI CATG 2 cut(s) 282, 489
FaiI YATR 6 cut(s) 280, 464, 487, 504, 548, 629
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 240, 272
FatI CATG 2 cut(s) 278, 485
FblI GTMKAC 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 394, 417, 436, 468
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 4 cut(s) 394, 417, 436, 468
FspBI CTAG 4 cut(s) 173, 207, 365, 494
FspI TGCGCA 1 cut(s) 140
GlaI GCGC 2 cut(s) 140, 475
GluI GCNGC 4 cut(s) 394, 417, 436, 468
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 1 cut(s) 61
HapII CCGG 7 cut(s) 224, 261, 268, 289, 432, 450, 471
HgaI GACGC 1 cut(s) 422
HhaI GCGC 2 cut(s) 141, 476
Hin1I GRCGYC 2 cut(s) 414, 474
Hin1II CATG 2 cut(s) 282, 489
Hin6I GCGC 2 cut(s) 139, 474
HinP1I GCGC 2 cut(s) 139, 474
HincII GTYRAC 2 cut(s) 22, 110
HindII GTYRAC 2 cut(s) 22, 110
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 2 cut(s) 271, 317
HpaII CCGG 7 cut(s) 224, 261, 268, 289, 432, 450, 471
Hpy166II GTNNAC 2 cut(s) 22, 110
Hpy188I TCNGA 4 cut(s) 69, 307, 322, 458
Hpy188III TCNNGA 2 cut(s) 289, 344
Hpy8I GTNNAC 2 cut(s) 22, 110
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 7 cut(s) 178, 191, 226, 242, 288, 593, 597
HpyCH4IV ACGT 2 cut(s) 130, 216
HpyCH4V TGCA 2 cut(s) 546, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 402, 473
HpyF3I CTNAG 2 cut(s) 478, 617
HpySE526I ACGT 2 cut(s) 130, 216
Hsp92I GRCGYC 2 cut(s) 414, 474
Hsp92II CATG 2 cut(s) 282, 489
HspAI GCGC 2 cut(s) 139, 474
KasI GGCGCC 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 288
KroI GCCGGC 2 cut(s) 449, 470
KroNI GCCGGC 2 cut(s) 451, 472
Kzo9I GATC 3 cut(s) 340, 367, 540
Lsp1109I GCAGC 3 cut(s) 405, 447, 454
MaeI CTAG 4 cut(s) 173, 207, 365, 494
MaeII ACGT 2 cut(s) 130, 216
MaeIII GTNAC 2 cut(s) 427, 565
MalI GATC 3 cut(s) 342, 369, 542
MboI GATC 3 cut(s) 340, 367, 540
MboII GAAGA 5 cut(s) 39, 310, 326, 339, 363
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 128, 268
MluCI AATT 4 cut(s) 52, 78, 522, 631
Mly113I GGCGCC 1 cut(s) 474
MroI TCCGGA 1 cut(s) 288
MroNI GCCGGC 2 cut(s) 449, 470
MseI TTAA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 7 cut(s) 224, 261, 268, 289, 432, 450, 471
MspR9I CCNGG 2 cut(s) 268, 372
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 207, 402, 473
NaeI GCCGGC 2 cut(s) 451, 472
NarI GGCGCC 1 cut(s) 474
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 485
NdeII GATC 3 cut(s) 340, 367, 540
NgoMIV GCCGGC 2 cut(s) 449, 470
NheI GCTAGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 282, 489
NlaIV GGNNCC 2 cut(s) 265, 475
NmuCI GTSAC 1 cut(s) 565
NsbI TGCGCA 1 cut(s) 140
PdiI GCCGGC 2 cut(s) 451, 472
PfeI GAWTC 2 cut(s) 271, 317
PkrI GCNGC 4 cut(s) 395, 418, 437, 469
PluTI GGCGCC 1 cut(s) 477
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 265, 475
PspPI GGNCC 5 cut(s) 59, 169, 322, 458, 482
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 133, 537
RsaNI GTAC 2 cut(s) 132, 536
Rsr2I CGGWCCG 1 cut(s) 322
RsrII CGGWCCG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 4 cut(s) 394, 417, 436, 468
Sau3AI GATC 3 cut(s) 340, 367, 540
Sau96I GGNCC 5 cut(s) 59, 169, 322, 458, 482
ScrFI CCNGG 2 cut(s) 268, 372
SduI GDGCHC 2 cut(s) 128, 268
SfoI GGCGCC 1 cut(s) 475
SinI GGWCC 4 cut(s) 169, 322, 458, 482
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 4 cut(s) 52, 78, 522, 631
SsiI CCGC 6 cut(s) 34, 167, 239, 417, 423, 438
SspDI GGCGCC 1 cut(s) 473
SspMI CTAG 4 cut(s) 173, 207, 365, 494
StyD4I CCNGG 2 cut(s) 266, 370
StyI CCWWGG 2 cut(s) 172, 485
TaiI ACGT 2 cut(s) 133, 219
TaqI TCGA 1 cut(s) 109
TaqII GACCGA 2 cut(s) 264, 339
TasI AATT 4 cut(s) 52, 78, 522, 631
TatI WGTACW 1 cut(s) 535
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 2 cut(s) 271, 317
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 3 cut(s) 393, 435, 467
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 4 cut(s) 169, 322, 458, 482
XapI RAATTY 2 cut(s) 52, 522
XmaJI CCTAGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 4 cut(s) 173, 207, 365, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.