Rh5BG037300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009743
Physical Location & Seq
Forward (+)
2607671 .. 2607991
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG037300.1

Sequence Viewer

Length: 321 bp
ATGACTAGCGGTGGTGCTGCGGGCCAGTGTGTGTCGATGGCGGGGCTCCTCTCGGCGCCTAATCCAACGGCGGTGGTATCAGTGCTTCAAAACCCTCTCTTTCGAGGAAGCTCTACGGTTTGGCTCATTGATCCGGGTGGAGAGTTTGTGGTTGGCAGCAGAGATGGCAAGACCGACGCTGCAGACGGCAGGGTTGCTGGCGGTGGAGGTGTCGCTGGCTTCAGATCTATGGCTGCTGGCGGCTCGGGTCCATGGTGGCTAGGGTTTGTCATTGGCCATGGGCTTTTGGTTGGCTATTGGGCTAGGGAGCTCGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.58

Weight (kDa)

5.55

Isoelectric Point (pI)

23.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 6 cut(s) 9, 20, 41, 71, 201, 240
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 2 cut(s) 111, 310
AluI AGCT 2 cut(s) 111, 310
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 2 cut(s) 22, 274
ApeKI GCWGC 4 cut(s) 17, 156, 179, 233
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 22, 248
AsuC2I CCSGG 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 248
BalI TGGCCA 1 cut(s) 276
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 48, 312
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 4 cut(s) 4, 166, 168, 220
BccI CCATC 2 cut(s) 31, 158
BceAI ACGGC 2 cut(s) 84, 202
BcnI CCSGG 1 cut(s) 135
BfaI CTAG 3 cut(s) 6, 260, 303
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 59
BglII AGATCT 1 cut(s) 224
BisI GCNGC 5 cut(s) 18, 157, 180, 234, 241
BlsI GCNGC 5 cut(s) 19, 158, 181, 235, 242
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 22, 248
BmiI GGNNCC 3 cut(s) 47, 57, 249
BmrFI CCNGG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 251, 277
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 251, 277
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 4 cut(s) 4, 166, 168, 220
BshFI GGCC 2 cut(s) 24, 276
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 134
BsnI GGCC 2 cut(s) 24, 276
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 48, 312
Bsp143I GATC 2 cut(s) 130, 224
Bsp19I CCATGG 2 cut(s) 251, 277
BspACI CCGC 6 cut(s) 9, 20, 41, 71, 201, 240
BspANI GGCC 2 cut(s) 24, 276
BspLI GGNNCC 3 cut(s) 47, 57, 249
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 251, 277
BssMI GATC 2 cut(s) 130, 224
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 2 cut(s) 251, 277
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 22, 199, 217, 238
BstDSI CCRYGG 2 cut(s) 251, 277
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 133, 227
BstMBI GATC 2 cut(s) 130, 224
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 4, 166, 168, 220
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 2 cut(s) 24, 276
BtgI CCRYGG 2 cut(s) 251, 277
BtsIMutI CAGTG 2 cut(s) 32, 87
Cac8I GCNNGC 4 cut(s) 22, 199, 217, 238
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 22, 248
CseI GACGC 1 cut(s) 185
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 2 cut(s) 252, 278
DinI GGCGCC 1 cut(s) 57
DpnI GATC 2 cut(s) 132, 226
DpnII GATC 2 cut(s) 130, 224
EaeI YGGCCR 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 251, 277
Eco24I GRGCYC 2 cut(s) 48, 312
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 251, 277
EcoT38I GRGCYC 2 cut(s) 48, 312
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 251, 277
FaeI CATG 2 cut(s) 255, 281
FaiI YATR 3 cut(s) 230, 253, 279
FatI CATG 2 cut(s) 251, 277
FauI CCCGC 2 cut(s) 13, 34
Fnu4HI GCNGC 5 cut(s) 18, 157, 180, 234, 241
FriOI GRGCYC 2 cut(s) 48, 312
Fsp4HI GCNGC 5 cut(s) 18, 157, 180, 234, 241
FspBI CTAG 3 cut(s) 6, 260, 303
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 18, 157, 180, 234, 241
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 2 cut(s) 24, 276
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 2 cut(s) 255, 281
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 255, 281
HspAI GCGC 1 cut(s) 56
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 130, 224
LmnI GCTCC 2 cut(s) 51, 307
LpnPI CCDG 6 cut(s) 38, 147, 175, 183, 201, 222
Lsp1109I GCAGC 4 cut(s) 4, 166, 168, 220
MaeI CTAG 3 cut(s) 6, 260, 303
MalI GATC 2 cut(s) 132, 226
MboI GATC 2 cut(s) 130, 224
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 48, 312
MlsI TGGCCA 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 276
Mly113I GGCGCC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 59, 98, 105, 200
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 165
NarI GGCGCC 1 cut(s) 56
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 2 cut(s) 251, 277
NdeII GATC 2 cut(s) 130, 224
NlaIII CATG 2 cut(s) 255, 281
NlaIV GGNNCC 3 cut(s) 47, 57, 249
NmeAIII GCCGAG 1 cut(s) 32
PkrI GCNGC 5 cut(s) 19, 158, 181, 235, 242
PluTI GGCGCC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 47, 57, 249
PspPI GGNCC 2 cut(s) 22, 248
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 224
SacI GAGCTC 1 cut(s) 312
SatI GCNGC 5 cut(s) 18, 157, 180, 234, 241
Sau3AI GATC 2 cut(s) 130, 224
Sau96I GGNCC 2 cut(s) 22, 248
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 2 cut(s) 48, 312
SetI ASST 3 cut(s) 113, 211, 312
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 57
SinI GGWCC 1 cut(s) 248
SsiI CCGC 6 cut(s) 9, 20, 41, 71, 201, 240
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 3 cut(s) 6, 260, 303
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 2 cut(s) 251, 277
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 3 cut(s) 35, 103, 312
TaqII GACCGA 1 cut(s) 188
TauI GCSGC 1 cut(s) 243
TscAI CASTG 2 cut(s) 32, 87
TseI GCWGC 4 cut(s) 17, 156, 179, 233
TspRI CASTG 2 cut(s) 32, 87
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 3 cut(s) 6, 260, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.