Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Reverse (-)

16820807 .. 16823006

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTGGGGGCTGCTGCCGAACGGGTGGCGGTTATCGACCTTGCCTTCGGGTCTTGGGGAAATTTTGCTTGGAGGTGGGACAGTGATGGCCATCGACATCAAATCTAGTTTCGATGCAGCGCTGAGTTGGTTGAGATCGCAAGCAATGGTTGATCATGGGTCAGTGTCCGGCGACATGGTTTGGTTATTAGGCAACTGTAGCTCGTGGAGATCAATGGCGGATCGAGATGTTTGGGTTTTCAAGTGGGTTTTGGTTGCATCGTCGTGTCAAACTCTATGGAGACAGTGTCAAGATGAAATTAATGCCCAGATTGCAGCTTGGTCCAAGATCTATCCTTATTATCGGCGACGACTTCAAGGCAAATCAAGCAGGAGACGGAGCCACTACCATCACTATGAAACGAGGGAACGATTCTCGGTGGGTTTAACTGGAGAACAGAACAGCGAGGCAGTGAGGGAGGCAGAGGGAGTGACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

8.91

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 218
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	60
AfeI	AGCGCT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	241, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	2 cut(s)	201, 317
AluI	AGCT	2 cut(s)	201, 317
Alw26I	GTCTC	2 cut(s)	274, 367
AlwI	GGATC	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	120
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	4 cut(s)	10, 13, 116, 314
ApoI	RAATTY	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	128, 326
BccI	CCATC	3 cut(s)	79, 98, 396
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	274, 367
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	196
BfoI	RGCGCY	1 cut(s)	122
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	4 cut(s)	11, 14, 117, 315
BlsI	GCNGC	4 cut(s)	12, 15, 118, 316
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	380
BmsI	GCATC	2 cut(s)	103, 266
BpmI	CTGGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	128, 326
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	274, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	134, 151, 209, 220, 327
BspACI	CCGC	2 cut(s)	28, 218
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	5 cut(s)	134, 151, 209, 220, 327
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	82, 197, 285
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	5 cut(s)	137, 154, 212, 223, 330
BstMAI	GTCTC	2 cut(s)	274, 367
BstMBI	GATC	5 cut(s)	134, 151, 209, 220, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 311, 366
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	128, 326
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	4 cut(s)	87, 168, 290, 456
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	476
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	321
CviAII	CATG	3 cut(s)	155, 175, 477
CviJI	RGCY	5 cut(s)	10, 89, 201, 317, 381
CviKI_1	RGCY	5 cut(s)	10, 89, 201, 317, 381
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	5 cut(s)	136, 153, 211, 222, 329
DpnII	GATC	5 cut(s)	134, 151, 209, 220, 327
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	158, 178, 480
FaiI	YATR	5 cut(s)	156, 176, 277, 396, 478
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	154, 174, 476
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	11, 14, 117, 315
Fsp4HI	GCNGC	4 cut(s)	11, 14, 117, 315
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	11, 14, 117, 315
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	158, 178, 480
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	224, 290, 477
Hpy99I	CGWCG	2 cut(s)	265, 351
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	3 cut(s)	82, 197, 285
HpyCH4V	TGCA	3 cut(s)	116, 257, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 311, 366
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	158, 178, 480
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	134, 151, 209, 220, 327
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	4 cut(s)	181, 320, 355, 414
Lsp1109I	GCAGC	2 cut(s)	128, 326
LweI	GCATC	2 cut(s)	103, 266
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	5 cut(s)	136, 153, 211, 222, 329
MboI	GATC	5 cut(s)	134, 151, 209, 220, 327
MflI	RGATCY	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	60, 297
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	6 cut(s)	65, 396, 439, 447, 451, 457
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	300, 425
MslI	CAYNNNNRTG	2 cut(s)	262, 393
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	198, 311, 366
NdeII	GATC	5 cut(s)	134, 151, 209, 220, 327
NlaIII	CATG	3 cut(s)	158, 178, 480
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	12, 15, 118, 316
PshBI	ATTAAT	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	262, 393
SaqAI	TTAA	2 cut(s)	300, 425
SatI	GCNGC	4 cut(s)	11, 14, 117, 315
Sau3AI	GATC	5 cut(s)	134, 151, 209, 220, 327
Sau96I	GGNCC	1 cut(s)	321
SetI	ASST	4 cut(s)	41, 76, 203, 319
SfaNI	GCATC	2 cut(s)	103, 266
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	2 cut(s)	262, 393
Sse9I	AATT	2 cut(s)	60, 297
SsiI	CCGC	2 cut(s)	28, 218
SspMI	CTAG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	82, 197, 285
TaqI	TCGA	4 cut(s)	35, 93, 111, 223
TasI	AATT	2 cut(s)	60, 297
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	300, 425
Tru9I	TTAA	2 cut(s)	300, 425
TscAI	CASTG	4 cut(s)	87, 168, 290, 456
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	4 cut(s)	10, 13, 116, 314
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	309, 411
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	4 cut(s)	87, 168, 290, 456
Tth111I	GACNNNGTC	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	321
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	60
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.