RLG00000035089

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009743
Physical Location & Seq
Reverse (-)
60618439 .. 60619983
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035089

Sequence Viewer

Length: 312 bp
ATGGCTAGCGGTGGTGCTGCGGGCCAGTGTGTGTCGATGGCGGGGCTCCTCCCGGCGTCTAATCCAGCGGCGGTGGTCTCAGTGCTTCAAGACCCCTCTTTCGAGGAAGCTCTACGGTTTGGCTCATTGATCCGGGTGGCGAGTTTGTGGTTGGCAGCAGAGATGACAAGACCGACGCTGCAGACGGCAGGGTTGTTGGCTTCGGATCTATGGATTAGGAAGCCATTGGAGAGGTTGAGGCCGCCCTCACGGACTCAGCCCCTGTCAAACTTCTTTATTGTTTGCCGGAAGGCGAGGGGCTCTAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.02

Weight (kDa)

10.75

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 9, 20, 41, 68, 71, 242
AclWI GGATC 2 cut(s) 124, 213
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 124, 213
AlwNI CAGNNNCTG 1 cut(s) 262
AoxI GGCC 2 cut(s) 22, 239
ApeKI GCWGC 3 cut(s) 17, 155, 178
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 2 cut(s) 53, 134
AsuNHI GCTAGC 1 cut(s) 5
BanII GRGCYC 2 cut(s) 48, 302
BbvI GCAGC 3 cut(s) 4, 165, 167
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 201
BcnI CCSGG 2 cut(s) 53, 134
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 5 cut(s) 18, 69, 156, 179, 242
BlsI GCNGC 5 cut(s) 19, 70, 157, 180, 243
Bme1390I CCNGG 2 cut(s) 53, 134
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 53, 134
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 53, 134
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 93, 269
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 4, 165, 167
BshFI GGCC 2 cut(s) 24, 241
BsiSI CCGG 3 cut(s) 53, 133, 286
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 24, 241
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 48, 302
Bsp143I GATC 2 cut(s) 129, 205
BspACI CCGC 6 cut(s) 9, 20, 41, 68, 71, 242
BspANI GGCC 2 cut(s) 24, 241
BspCNI CTCAG 2 cut(s) 92, 268
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 2 cut(s) 124, 213
BspTNI GGTCTC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 25
BssMI GATC 2 cut(s) 129, 205
BssNI GRCGYC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 7, 22
BstDEI CTNAG 3 cut(s) 79, 255, 303
BstKTI GATC 2 cut(s) 132, 208
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 129, 205
BstSCI CCNGG 2 cut(s) 51, 132
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 3 cut(s) 4, 165, 167
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 2 cut(s) 24, 241
BtsIMutI CAGTG 2 cut(s) 32, 87
Cac8I GCNNGC 2 cut(s) 7, 22
CaiI CAGNNNCTG 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 22
CseI GACGC 2 cut(s) 45, 184
DdeI CTNAG 3 cut(s) 79, 255, 303
DpnI GATC 2 cut(s) 131, 207
DpnII GATC 2 cut(s) 129, 205
Eco24I GRGCYC 2 cut(s) 48, 302
Eco31I GGTCTC 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 48, 302
FaiI YATR 1 cut(s) 211
FauI CCCGC 2 cut(s) 13, 34
Fnu4HI GCNGC 5 cut(s) 18, 69, 156, 179, 242
FriOI GRGCYC 2 cut(s) 48, 302
Fsp4HI GCNGC 5 cut(s) 18, 69, 156, 179, 242
FspBI CTAG 1 cut(s) 6
GluI GCNGC 5 cut(s) 18, 69, 156, 179, 242
HaeIII GGCC 2 cut(s) 24, 241
HapII CCGG 3 cut(s) 53, 133, 286
HgaI GACGC 2 cut(s) 45, 184
Hin1I GRCGYC 1 cut(s) 56
HinfI GANTC 1 cut(s) 253
HpaII CCGG 3 cut(s) 53, 133, 286
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 3 cut(s) 79, 255, 303
Hsp92I GRCGYC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 129, 205
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 7 cut(s) 38, 66, 78, 146, 174, 275, 299
Lsp1109I GCAGC 3 cut(s) 4, 165, 167
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 131, 207
MboI GATC 2 cut(s) 129, 205
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 48, 302
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 7 cut(s) 59, 97, 106, 225, 231, 256, 288
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 53, 133, 286
MspR9I CCNGG 2 cut(s) 53, 134
NciI CCSGG 2 cut(s) 53, 134
NdeII GATC 2 cut(s) 129, 205
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 47
PkrI GCNGC 5 cut(s) 19, 70, 157, 180, 243
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 205
SatI GCNGC 5 cut(s) 18, 69, 156, 179, 242
Sau3AI GATC 2 cut(s) 129, 205
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 53, 134
SduI GDGCHC 2 cut(s) 48, 302
SetI ASST 2 cut(s) 112, 236
SfcI CTRYAG 1 cut(s) 179
SsiI CCGC 6 cut(s) 9, 20, 41, 68, 71, 242
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 51, 132
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 35, 102
TaqII GACCGA 1 cut(s) 187
TauI GCSGC 2 cut(s) 71, 244
TscAI CASTG 2 cut(s) 32, 87
TseI GCWGC 3 cut(s) 17, 155, 178
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 32, 87
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.