Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

43801462 .. 43814504

Gene Structure 13043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCCAGAGCATCTCCTTCAGCAAACAATACATAAAACAGATGTTTCTCTTCATTTTCTAGCCAGTAATTACTCTGGATCTACAGACCATAATCCAACTGCAATTACTTGCTTTACTAGGAAGTTTGGTGATGAAAATAGCATAAGAGCGGCAGCTGGTACTTGCATACCAGCTGCAGCTGCTGCTTCTGCTGCTATGCATTTTCATCTTGCCACCGGGAGGTTACGATCATTTGACGAAGCAAGAAACTTGCCGCCTAACCAGTGCAGACAAGTCACACAAGATGTGCAGTCCGGAACAAAGCCCACGTCGCCCTACCACAATAGGGCAGGGACTTATTGCCGGCATGCTGGCACTACTAATAATCATAGAAGGAGAACATTATCCCAATCAGTGGGGAGAGAGGTTTTTTGCGTTTTCTTTGTCGACTCGCTGATTGCGAGGATCTTTATGAAACTGGGATCTCTAAATTTACGGAGAGAGCCGCAGCAGTGGTCGGGATGGTCTCAGACGCCCAAAACTCAGGCTGAGAAGATCGGAACTGGGCTAGGGACGAACATGAGTTCCGGCCAATCGAAGTTGTACTGCGGCAAGGAGGGGAAAGAGGTTATCTTTTTTGAACCCATGACGCCGGCTTCGGGTCTTTTAGGGAATGGTGAGGCGGCTACCGACCTAGTGGTCTTCCTTTGTCAAATCGCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.6

Weight (kDa)

9.3

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	1 cut(s)	698
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	5 cut(s)	149, 254, 485, 588, 662
AclWI	GGATC	3 cut(s)	85, 452, 469
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	469
AcyI	GRCGYC	2 cut(s)	512, 629
AfaI	GTAC	2 cut(s)	160, 584
AfiI	CCNNNNNNNGG	4 cut(s)	219, 325, 394, 638
AgsI	TTSAA	1 cut(s)	620
AjiI	CACGTC	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	3 cut(s)	155, 173, 179
AluI	AGCT	3 cut(s)	155, 173, 179
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	3 cut(s)	85, 452, 469
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	7 cut(s)	152, 173, 176, 179, 182, 191, 487
ApoI	RAATTY	1 cut(s)	469
ArsI	GACNNNNNNTTYG	4 cut(s)	293, 325, 619, 651
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	140, 668
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	7 cut(s)	160, 164, 166, 169, 178, 188, 499
BccI	CCATC	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	4 cut(s)	59, 117, 548, 674
BfmI	CTRYAG	2 cut(s)	81, 174
Bme1390I	CCNGG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	217
BmrI	ACTGGG	2 cut(s)	467, 552
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	2 cut(s)	467, 552
BpiI	GAAGAC	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	217
BsaHI	GRCGYC	2 cut(s)	512, 629
BsaI	GGTCTC	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 325, 394, 638
Bse118I	RCCGGY	2 cut(s)	342, 631
Bse1I	ACTGG	4 cut(s)	63, 262, 462, 547
BseAI	TCCGGA	1 cut(s)	293
BseGI	GGATG	1 cut(s)	506
BseLI	CCNNNNNNNGG	4 cut(s)	219, 325, 394, 638
BseMII	CTCAG	3 cut(s)	519, 521, 536
BseNI	ACTGG	4 cut(s)	63, 262, 462, 547
BseXI	GCAGC	7 cut(s)	160, 164, 166, 169, 178, 188, 499
BsgI	GTGCAG	2 cut(s)	286, 308
Bsh1236I	CGCG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	570
BsiSI	CCGG	5 cut(s)	216, 294, 343, 567, 632
BslFI	GGGAC	2 cut(s)	346, 565
BslI	CCNNNNNNNGG	4 cut(s)	219, 325, 394, 638
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	2 cut(s)	346, 565
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	510
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	5 cut(s)	77, 227, 444, 461, 534
Bsp68I	TCGCGA	1 cut(s)	698
BspACI	CCGC	5 cut(s)	149, 254, 485, 588, 662
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	520, 520, 535
BspEI	TCCGGA	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	698
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	3 cut(s)	85, 452, 469
BspTNI	GGTCTC	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	342, 631
BsrI	ACTGG	4 cut(s)	63, 262, 462, 547
BssAI	RCCGGY	2 cut(s)	342, 631
BssMI	GATC	5 cut(s)	77, 227, 444, 461, 534
BssNI	GRCGYC	2 cut(s)	512, 629
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	512, 629
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	344, 348, 352, 633
BstDEI	CTNAG	3 cut(s)	507, 522, 528
BstF5I	GGATG	1 cut(s)	506
BstFNI	CGCG	1 cut(s)	698
BstKTI	GATC	5 cut(s)	80, 230, 447, 464, 537
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	5 cut(s)	77, 227, 444, 461, 534
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 182, 188, 191, 310
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	2 cut(s)	81, 174
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	7 cut(s)	160, 164, 166, 169, 178, 188, 499
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	3 cut(s)	77, 444, 461
BstYI	RGATCY	3 cut(s)	77, 444, 461
BsuRI	GGCC	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	506
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	3 cut(s)	269, 399, 497
BtuMI	TCGCGA	1 cut(s)	698
Cac8I	GCNNGC	4 cut(s)	344, 348, 352, 633
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr10I	RCCGGY	2 cut(s)	342, 631
CseI	GACGC	2 cut(s)	520, 637
Csp6I	GTAC	2 cut(s)	159, 583
CviAII	CATG	3 cut(s)	347, 559, 625
CviQI	GTAC	2 cut(s)	159, 583
DdeI	CTNAG	3 cut(s)	507, 522, 528
DpnI	GATC	5 cut(s)	79, 229, 446, 463, 536
DpnII	GATC	5 cut(s)	77, 227, 444, 461, 534
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	201
FaeI	CATG	3 cut(s)	350, 562, 628
FaqI	GGGAC	2 cut(s)	346, 565
FatI	CATG	3 cut(s)	346, 558, 624
FblI	GTMKAC	1 cut(s)	426
FokI	GGATG	1 cut(s)	513
FspBI	CTAG	4 cut(s)	59, 117, 548, 674
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	5 cut(s)	216, 294, 343, 567, 632
HgaI	GACGC	2 cut(s)	520, 637
Hin1I	GRCGYC	2 cut(s)	512, 629
Hin1II	CATG	3 cut(s)	350, 562, 628
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	5 cut(s)	216, 294, 343, 567, 632
HphI	GGTGA	2 cut(s)	140, 668
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	510, 539
Hpy188III	TCNNGA	4 cut(s)	75, 294, 498, 697
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	26, 366
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	6 cut(s)	101, 165, 176, 199, 267, 289
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 182, 188, 191, 310
HpyF3I	CTNAG	3 cut(s)	507, 522, 528
HpySE526I	ACGT	1 cut(s)	308
Hsp92I	GRCGYC	2 cut(s)	512, 629
Hsp92II	CATG	3 cut(s)	350, 562, 628
Kpn2I	TCCGGA	1 cut(s)	293
KroI	GCCGGC	2 cut(s)	342, 631
KroNI	GCCGGC	2 cut(s)	344, 633
Kzo9I	GATC	5 cut(s)	77, 227, 444, 461, 534
Lsp1109I	GCAGC	7 cut(s)	160, 164, 166, 169, 178, 188, 499
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	4 cut(s)	59, 117, 548, 674
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	222, 274
MalI	GATC	5 cut(s)	79, 229, 446, 463, 536
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	5 cut(s)	77, 227, 444, 461, 534
MboII	GAAGA	3 cut(s)	41, 544, 673
MflI	RGATCY	3 cut(s)	77, 444, 461
MluCI	AATT	3 cut(s)	67, 102, 469
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	213, 397, 435, 589, 598, 652
Mph1103I	ATGCAT	1 cut(s)	201
MroI	TCCGGA	1 cut(s)	293
MroNI	GCCGGC	2 cut(s)	342, 631
MspA1I	CMGCKG	3 cut(s)	155, 173, 179
MspI	CCGG	5 cut(s)	216, 294, 343, 567, 632
MspR9I	CCNGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	5 cut(s)	179, 182, 188, 191, 310
NaeI	GCCGGC	2 cut(s)	344, 633
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	5 cut(s)	77, 227, 444, 461, 534
NgoMIV	GCCGGC	2 cut(s)	342, 631
NlaIII	CATG	3 cut(s)	350, 562, 628
NmuCI	GTSAC	1 cut(s)	274
NruI	TCGCGA	1 cut(s)	698
NsiI	ATGCAT	1 cut(s)	201
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PdiI	GCCGGC	2 cut(s)	344, 633
PflMI	CCANNNNNTGG	1 cut(s)	394
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	77, 444, 461
PvuII	CAGCTG	3 cut(s)	155, 173, 179
RruI	TCGCGA	1 cut(s)	698
RsaI	GTAC	2 cut(s)	160, 584
RsaNI	GTAC	2 cut(s)	159, 583
SalI	GTCGAC	1 cut(s)	425
Sau3AI	GATC	5 cut(s)	77, 227, 444, 461, 534
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	8 cut(s)	157, 175, 181, 224, 311, 408, 609, 675
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	2 cut(s)	81, 174
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	67, 102, 469
SsiI	CCGC	5 cut(s)	149, 254, 485, 588, 662
SspMI	CTAG	4 cut(s)	59, 117, 548, 674
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	426, 575
TasI	AATT	3 cut(s)	67, 102, 469
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	5 cut(s)	152, 256, 487, 591, 665
TscAI	CASTG	3 cut(s)	269, 399, 497
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	7 cut(s)	152, 173, 176, 179, 182, 191, 487
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	4 cut(s)	41, 147, 194, 467
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	3 cut(s)	269, 399, 497
Van91I	CCANNNNNTGG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	4 cut(s)	59, 117, 548, 674
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.