Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000718.1

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

34781 .. 35231

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000718.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaattctggcaaatcgaagttgaactccgacgaggaggggaaaaggttgaactccggcgaggaggggaaagagattgcagaaattaagtttactgctgattcgaagttggctgaggcaaatgctttagttgctagcatagaagaaaaatcactacaggttgaggcaaagacagcaaccagatgggcggcggtggcggggggctcaaagtcggatttagaatggagttcgaatttggggctgcacgggaccttcttccgatgttctgttgcggcaggctggcagaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.29

Weight (kDa)

5.84

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	188, 191, 197, 272
AcsI	RAATTY	2 cut(s)	4, 232
AgsI	TTSAA	2 cut(s)	25, 52
ApeKI	GCWGC	1 cut(s)	241
ApoI	RAATTY	2 cut(s)	4, 232
AspS9I	GGNCC	1 cut(s)	249
AsuII	TTCGAA	2 cut(s)	104, 230
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	155
BisI	GCNGC	3 cut(s)	189, 242, 273
BlsI	GCNGC	3 cut(s)	190, 243, 274
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	250
BmtI	GCTAGC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	2 cut(s)	104, 230
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	50, 77
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
Bsp119I	TTCGAA	2 cut(s)	104, 230
Bsp1286I	GDGCHC	1 cut(s)	206
BspACI	CCGC	4 cut(s)	188, 191, 197, 272
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	138
BspT104I	TTCGAA	2 cut(s)	104, 230
BstBI	TTCGAA	2 cut(s)	104, 230
BstC8I	GCNNGC	3 cut(s)	136, 277, 281
BstDEI	CTNAG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 173, 194
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	136, 277, 281
Cfr13I	GGNCC	1 cut(s)	249
CviJI	RGCY	4 cut(s)	113, 204, 241, 279
CviKI_1	RGCY	4 cut(s)	113, 204, 241, 279
DdeI	CTNAG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	206
FaiI	YATR	1 cut(s)	140
FaqI	GGGAC	1 cut(s)	262
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	189, 242, 273
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	3 cut(s)	189, 242, 273
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	3 cut(s)	189, 242, 273
HapII	CCGG	1 cut(s)	57
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	3 cut(s)	31, 214, 260
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	80, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 173, 194
HpyF3I	CTNAG	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	70, 143, 193, 261, 265
Lsp1109I	GCAGC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	135
MboII	GAAGA	2 cut(s)	155, 247
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	4, 84, 232
MmeI	TCCRAC	2 cut(s)	54, 192
MnlI	CCTC	7 cut(s)	28, 31, 55, 58, 109, 157, 279
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	131, 173, 194
NheI	GCTAGC	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	250
NspV	TTCGAA	2 cut(s)	104, 230
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	190, 243, 274
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	249
PspPPI	RGGWCCY	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	189, 242, 273
Sau96I	GGNCC	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	4 cut(s)	50, 162, 254, 290
SfcI	CTRYAG	1 cut(s)	155
SfuI	TTCGAA	2 cut(s)	104, 230
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	3 cut(s)	4, 84, 232
SsiI	CCGC	4 cut(s)	188, 191, 197, 272
SspMI	CTAG	1 cut(s)	135
TaqI	TCGA	3 cut(s)	17, 104, 230
TasI	AATT	3 cut(s)	4, 84, 232
TauI	GCSGC	2 cut(s)	191, 275
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	2 cut(s)	4, 232
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.