Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002244.1

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Reverse (-)

85574 .. 87438

Gene Structure 1865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002244.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgaattctggcaaatcgaagttgaactctgacaaggaggggaaaaggttgaactccagcgaggaggggaaagagattgcagaaattaagtttattgctgattcgaagttggctgaggcaaatgctttagttgctagcatagaagaaaaatcactacagttagaggcaaagccagcgaccatgatgggcggcggtggcagggggctcaaagtcggatttcaaatggagttcgaatttggggttgcacgggactttcttccgatgttctgttgcggcgggctggcagaggtgaggctgggatcgagaacttcggcgttcgtcaagcggtactcgtccggtggtggcctagcgttagcgttgatcttggtcgcggtgacgtgggggctgttgtcagacggctggtggttatcggccttgcctttgggtcttggggaaattttgcttggaggtgggacagtggtggccattggcatcaaatctggtttcgatgcagcactgagttggttgagatcgcaagcaacaattgatcatggatcggtgtcccgcgacatggtttggttaccaagcagcagcggctcgtggagatcaatggcggatcgagatgttttgggtttccaagtgggttttggtcgctgcgtcgtatcaaactctatggagacggcgtcgaggttggtcaagacttctaggggtgctgtggtggccgacgtggtgctttcgacgatgctgcacagtgcggcaggggctggtttgtgccatgccaacttgttgtgcttttgggctggtttttcctttgggcttctgggtagcagcctttattacgggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

28.93

Weight (kDa)

8.27

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	371, 546
AclWI	GGATC	3 cut(s)	307, 541, 603
AcoI	YGGCCR	2 cut(s)	462, 699
AcsI	RAATTY	3 cut(s)	4, 233, 435
AcyI	GRCGYC	1 cut(s)	662
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	25, 52, 221
AjiI	CACGTC	2 cut(s)	378, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
Alw26I	GTCTC	1 cut(s)	650
AlwI	GGATC	3 cut(s)	307, 541, 603
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	4 cut(s)	343, 411, 462, 699
ApeKI	GCWGC	6 cut(s)	491, 567, 570, 633, 724, 807
ApoI	RAATTY	3 cut(s)	4, 233, 435
AsuHPI	GGTGA	2 cut(s)	301, 385
AsuII	TTCGAA	2 cut(s)	104, 231
AsuNHI	GCTAGC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	6 cut(s)	503, 579, 582, 620, 711, 819
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	412, 675
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	3 cut(s)	135, 347, 684
BfmI	CTRYAG	1 cut(s)	155
BmgBI	CACGTC	2 cut(s)	378, 706
BmsI	GCATC	3 cut(s)	478, 480, 711
BmtI	GCTAGC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	2 cut(s)	104, 231
BsaHI	GRCGYC	1 cut(s)	662
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	2 cut(s)	105, 488
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	6 cut(s)	503, 579, 582, 620, 711, 819
BseYI	CCCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	710
Bsh1236I	CGCG	2 cut(s)	371, 546
BshFI	GGCC	4 cut(s)	345, 413, 464, 701
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	3 cut(s)	263, 466, 526
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	3 cut(s)	263, 466, 526
BsnI	GGCC	4 cut(s)	345, 413, 464, 701
Bsp119I	TTCGAA	2 cut(s)	104, 231
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
BspANI	GGCC	4 cut(s)	345, 413, 464, 701
BspCNI	CTCAG	2 cut(s)	106, 489
BspFNI	CGCG	2 cut(s)	371, 546
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	307, 541, 603
BspT104I	TTCGAA	2 cut(s)	104, 231
BssMI	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
BssNI	GRCGYC	1 cut(s)	662
BssSI	CACGAG	1 cut(s)	577
Bst2BI	CACGAG	1 cut(s)	577
Bst4CI	ACNGT	3 cut(s)	159, 457, 731
BstACI	GRCGYC	1 cut(s)	662
BstBI	TTCGAA	2 cut(s)	104, 231
BstC8I	GCNNGC	5 cut(s)	136, 174, 278, 282, 516
BstDEI	CTNAG	2 cut(s)	114, 497
BstEII	GGTNACC	1 cut(s)	558
BstFNI	CGCG	2 cut(s)	371, 546
BstKTI	GATC	7 cut(s)	302, 363, 512, 529, 536, 587, 598
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 173, 195, 573, 698, 740
BstPI	GGTNACC	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	155
BstUI	CGCG	2 cut(s)	371, 546
BstV1I	GCAGC	6 cut(s)	503, 579, 582, 620, 711, 819
BsuRI	GGCC	4 cut(s)	345, 413, 464, 701
BtrI	CACGTC	2 cut(s)	378, 706
BtsIMutI	CAGTG	3 cut(s)	462, 494, 736
Cac8I	GCNNGC	5 cut(s)	136, 174, 278, 282, 516
CaiI	CAGNNNCTG	1 cut(s)	743
CseI	GACGC	2 cut(s)	625, 651
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	4 cut(s)	181, 530, 550, 755
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	114, 497
DpnI	GATC	7 cut(s)	301, 362, 511, 528, 535, 586, 597
DpnII	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
EaeI	YGGCCR	2 cut(s)	462, 699
EciI	GGCGGA	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	558
EcoO65I	GGTNACC	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	4 cut(s)	184, 533, 553, 758
FaiI	YATR	6 cut(s)	140, 182, 531, 551, 653, 756
FaqI	GGGAC	3 cut(s)	263, 466, 526
FatI	CATG	4 cut(s)	180, 529, 549, 754
FauI	CCCGC	2 cut(s)	269, 551
FbaI	TGATCA	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	135, 347, 684
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	4 cut(s)	345, 413, 464, 701
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	625, 651
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	4 cut(s)	184, 533, 553, 758
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	2 cut(s)	301, 385
Hpy188I	TCNGA	4 cut(s)	31, 215, 261, 394
Hpy188III	TCNNGA	3 cut(s)	303, 599, 676
Hpy99I	CGWCG	4 cut(s)	641, 667, 707, 721
HpyCH4III	ACNGT	3 cut(s)	159, 457, 731
HpyCH4IV	ACGT	2 cut(s)	377, 705
HpyCH4V	TGCA	4 cut(s)	80, 245, 491, 727
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 173, 195, 573, 698, 740
HpyF3I	CTNAG	2 cut(s)	114, 497
HpySE526I	ACGT	2 cut(s)	377, 705
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	4 cut(s)	184, 533, 553, 758
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
Lsp1109I	GCAGC	6 cut(s)	503, 579, 582, 620, 711, 819
LweI	GCATC	3 cut(s)	478, 480, 711
MaeI	CTAG	3 cut(s)	135, 347, 684
MaeII	ACGT	2 cut(s)	377, 705
MaeIII	GTNAC	2 cut(s)	373, 558
MalI	GATC	7 cut(s)	301, 362, 511, 528, 535, 586, 597
MboI	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
MboII	GAAGA	2 cut(s)	155, 248
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	5 cut(s)	4, 84, 233, 435, 522
MluNI	TGGCCA	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	31, 55, 58, 109, 157, 280, 285, 440, 660
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	522
MvnI	CGCG	2 cut(s)	371, 546
MwoI	GCNNNNNNNGC	6 cut(s)	131, 173, 195, 573, 698, 740
NdeII	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	4 cut(s)	184, 533, 553, 758
NmuCI	GTSAC	1 cut(s)	373
NspV	TTCGAA	2 cut(s)	104, 231
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	661
PspEI	GGTNACC	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	661
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	7 cut(s)	299, 360, 509, 526, 533, 584, 595
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	50, 291, 380, 451, 671, 708
SfaNI	GCATC	3 cut(s)	478, 480, 711
SfcI	CTRYAG	1 cut(s)	155
SfuI	TTCGAA	2 cut(s)	104, 231
Sse9I	AATT	5 cut(s)	4, 84, 233, 435, 522
SspMI	CTAG	3 cut(s)	135, 347, 684
TaaI	ACNGT	3 cut(s)	159, 457, 731
TaiI	ACGT	2 cut(s)	380, 708
TaqI	TCGA	8 cut(s)	17, 104, 231, 302, 486, 598, 665, 716
TasI	AATT	5 cut(s)	4, 84, 233, 435, 522
TauI	GCSGC	4 cut(s)	192, 276, 576, 737
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	462, 501, 736
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	6 cut(s)	491, 567, 570, 633, 724, 807
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	462, 501, 736
Tth111I	GACNNNGTC	1 cut(s)	661
XapI	RAATTY	3 cut(s)	4, 233, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XspI	CTAG	3 cut(s)	135, 347, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.