RLG00000012391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009743
Physical Location & Seq
Reverse (-)
18231659 .. 18236679
5021 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012391

Sequence Viewer

Length: 804 bp
ATGGCTAGCGGTGGTGTTGTGGGGCAGTGTGTGTCGATGGCGTGGCTCCTTCAAGCGTCTAATCCAGCAGCACTGGTCTCAGTGCTTCAAGACCCTCCCTTTCGAGGAAGTTGTACGGTTTGGCTCATTGATCCGAGTGGCGAGTTTGTGGTTGGCAACAGAGATGGCAAGACCGACGCTGCAAACGGCAGGGTTGCTAGCGGTGGAGGTGTCGCTAGCTTAGGACCTATGGCTGCTGGCTGCTCGGGTCCATGGTGGCTAGGTTCCAGAGGATTTATACACCATGGTGGTTATTTTGACAAGATGCCTAATGGTATGAAGAAGTATAAAGTGGCTAGGTTCAACAAGGATGGTGGGAAAATTTGGCTAGATGGTCTAGATCCTGATAAGATTGCATGGACAGAGTTTGGAAACATTGCTTGGGATCTTGGGTACACGGAGAAGCCAATTTCATACTACTATAAGATGCCTAGGACTTACTGCAATGAGGGATGGATGCCACTTAGAAACGATGCATATGCACTTGAGATGATGAAGCTTATTCCACTGAAGACAAGGCATACTTCATTACTGGTGGCAGCAAAAGTTCCAGCTTCAAAATGGAGGCCCAGCTTGAATGATAATATCATCAAGTCTAGGAAGGGTTGGAAGAAGATGAAAACCATGGAGGGCAGCCAAGGTGCCAATGCAGGGCCTTCTAGTTCACAAACTAGGCATGATCCTCCAACACAAAGCAGCCAAAATCTTGCAGCAAAAAAGGCAAGGCACCAAGGCCAAACTGATTCTGAATGGGCAGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

268

Amino Acids

29.11

Weight (kDa)

9.57

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 93 - 181 1.8e-08 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 680, 765
AciI CCGC 2 cut(s) 9, 201
AclWI GGATC 4 cut(s) 125, 374, 432, 713
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 2 cut(s) 115, 434
AfiI CCNNNNNNNGG 2 cut(s) 104, 690
AgsI TTSAA 5 cut(s) 53, 89, 343, 597, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 4 cut(s) 219, 538, 593, 612
AluI AGCT 4 cut(s) 219, 538, 593, 612
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 125, 374, 432, 713
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 3 cut(s) 605, 692, 772
ApeKI GCWGC 8 cut(s) 68, 179, 233, 240, 578, 672, 735, 749
ApoI RAATTY 1 cut(s) 360
AspA2I CCTAGG 1 cut(s) 470
AspS9I GGNCC 4 cut(s) 224, 248, 606, 692
AsuNHI GCTAGC 3 cut(s) 5, 197, 215
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 2 cut(s) 224, 248
AvrII CCTAGG 1 cut(s) 470
BanI GGYRCC 2 cut(s) 680, 765
BbsI GAAGAC 1 cut(s) 557
BbvI GCAGC 8 cut(s) 80, 166, 220, 227, 590, 684, 747, 761
BccI CCATC 5 cut(s) 31, 158, 344, 365, 486
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 8 cut(s) 69, 180, 234, 241, 579, 673, 736, 750
BlnI CCTAGG 1 cut(s) 470
BlsI GCNGC 8 cut(s) 70, 181, 235, 242, 580, 674, 737, 751
Bme18I GGWCC 2 cut(s) 224, 248
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 224, 248, 606, 692
BmiI GGNNCC 5 cut(s) 47, 249, 265, 682, 767
BmsI GCATC 4 cut(s) 294, 456, 486, 502
BmtI GCTAGC 3 cut(s) 9, 201, 219
BpiI GAAGAC 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 6 cut(s) 251, 283, 470, 663, 676, 769
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 690
Bse1I ACTGG 2 cut(s) 78, 576
Bse3DI GCAATG 2 cut(s) 414, 490
BseDI CCNNGG 6 cut(s) 251, 283, 470, 663, 676, 769
BseGI GGATG 3 cut(s) 355, 497, 501
BseLI CCNNNNNNNGG 2 cut(s) 104, 690
BseMI GCAATG 2 cut(s) 414, 490
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 78, 576
BseXI GCAGC 8 cut(s) 80, 166, 220, 227, 590, 684, 747, 761
BseYI CCCAGC 1 cut(s) 608
BshFI GGCC 3 cut(s) 607, 694, 774
BshNI GGYRCC 2 cut(s) 680, 765
BsiHKCI CYCGRG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 104, 690
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 3 cut(s) 607, 694, 774
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 244
Bsp143I GATC 4 cut(s) 130, 379, 424, 718
Bsp19I CCATGG 3 cut(s) 251, 283, 663
BspACI CCGC 2 cut(s) 9, 201
BspANI GGCC 3 cut(s) 607, 694, 774
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 5 cut(s) 47, 249, 265, 682, 767
BspOI GCTAGC 3 cut(s) 9, 201, 219
BspPI GGATC 4 cut(s) 125, 374, 432, 713
BspT107I GGYRCC 2 cut(s) 680, 765
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 414, 490
BsrI ACTGG 2 cut(s) 78, 576
BssECI CCNNGG 6 cut(s) 251, 283, 470, 663, 676, 769
BssMI GATC 4 cut(s) 130, 379, 424, 718
BssT1I CCWWGG 6 cut(s) 251, 283, 470, 663, 676, 769
Bst4CI ACNGT 1 cut(s) 118
BstC8I GCNNGC 4 cut(s) 7, 199, 217, 238
BstDEI CTNAG 3 cut(s) 79, 220, 503
BstDSI CCRYGG 3 cut(s) 251, 283, 663
BstF5I GGATG 3 cut(s) 355, 497, 501
BstKTI GATC 4 cut(s) 133, 382, 427, 721
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 130, 379, 424, 718
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstV1I GCAGC 8 cut(s) 80, 166, 220, 227, 590, 684, 747, 761
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 2 cut(s) 379, 424
BstYI RGATCY 2 cut(s) 379, 424
BsuRI GGCC 3 cut(s) 607, 694, 774
BtgI CCRYGG 3 cut(s) 251, 283, 663
BtsCI GGATG 3 cut(s) 355, 497, 501
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 32, 71, 87, 545
Cac8I GCNNGC 4 cut(s) 7, 199, 217, 238
Cfr13I GGNCC 4 cut(s) 224, 248, 606, 692
CseI GACGC 2 cut(s) 45, 185
Csp6I GTAC 2 cut(s) 114, 433
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 5 cut(s) 252, 284, 396, 664, 716
CviQI GTAC 2 cut(s) 114, 433
DdeI CTNAG 3 cut(s) 79, 220, 503
DpnI GATC 4 cut(s) 132, 381, 426, 720
DpnII GATC 4 cut(s) 130, 379, 424, 718
Eco130I CCWWGG 6 cut(s) 251, 283, 470, 663, 676, 769
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 224, 248
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 224, 692
EcoT14I CCWWGG 6 cut(s) 251, 283, 470, 663, 676, 769
EcoT22I ATGCAT 1 cut(s) 517
ErhI CCWWGG 6 cut(s) 251, 283, 470, 663, 676, 769
FaeI CATG 5 cut(s) 255, 287, 399, 667, 719
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FatI CATG 5 cut(s) 251, 283, 395, 663, 715
FauNDI CATATG 1 cut(s) 517
Fnu4HI GCNGC 8 cut(s) 69, 180, 234, 241, 579, 673, 736, 750
FokI GGATG 3 cut(s) 362, 504, 508
Fsp4HI GCNGC 8 cut(s) 69, 180, 234, 241, 579, 673, 736, 750
GluI GCNGC 8 cut(s) 69, 180, 234, 241, 579, 673, 736, 750
GsaI CCCAGC 1 cut(s) 612
HaeIII GGCC 3 cut(s) 607, 694, 774
HgaI GACGC 2 cut(s) 45, 185
Hin1II CATG 5 cut(s) 255, 287, 399, 667, 719
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 1 cut(s) 782
Hpy166II GTNNAC 2 cut(s) 435, 704
Hpy188I TCNGA 3 cut(s) 135, 787, 803
Hpy188III TCNNGA 4 cut(s) 89, 267, 377, 383
Hpy8I GTNNAC 2 cut(s) 435, 704
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 59, 634, 705
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 7 cut(s) 182, 395, 483, 515, 521, 689, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 3 cut(s) 79, 220, 503
Hsp92II CATG 5 cut(s) 255, 287, 399, 667, 719
Kzo9I GATC 4 cut(s) 130, 379, 424, 718
LmnI GCTCC 1 cut(s) 51
Lsp1109I GCAGC 8 cut(s) 80, 166, 220, 227, 590, 684, 747, 761
LweI GCATC 4 cut(s) 294, 456, 486, 502
MalI GATC 4 cut(s) 132, 381, 426, 720
MboI GATC 4 cut(s) 130, 379, 424, 718
MboII GAAGA 4 cut(s) 331, 562, 661, 664
MflI RGATCY 2 cut(s) 379, 424
MluCI AATT 2 cut(s) 360, 447
MmeI TCCRAC 2 cut(s) 626, 749
MnlI CCTC 8 cut(s) 98, 105, 200, 263, 481, 597, 661, 732
Mph1103I ATGCAT 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 758
NcoI CCATGG 3 cut(s) 251, 283, 663
NdeI CATATG 1 cut(s) 517
NdeII GATC 4 cut(s) 130, 379, 424, 718
NheI GCTAGC 3 cut(s) 5, 197, 215
NlaIII CATG 5 cut(s) 255, 287, 399, 667, 719
NlaIV GGNNCC 5 cut(s) 47, 249, 265, 682, 767
NsiI ATGCAT 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 285
PfeI GAWTC 1 cut(s) 782
PkrI GCNGC 8 cut(s) 70, 181, 235, 242, 580, 674, 737, 751
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 608
PspN4I GGNNCC 5 cut(s) 47, 249, 265, 682, 767
PspPI GGNCC 4 cut(s) 224, 248, 606, 692
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 2 cut(s) 379, 424
RsaI GTAC 2 cut(s) 115, 434
RsaNI GTAC 2 cut(s) 114, 433
RseI CAYNNNNRTG 1 cut(s) 285
SatI GCNGC 8 cut(s) 69, 180, 234, 241, 579, 673, 736, 750
Sau3AI GATC 4 cut(s) 130, 379, 424, 718
Sau96I GGNCC 4 cut(s) 224, 248, 606, 692
SetI ASST 9 cut(s) 211, 221, 229, 265, 341, 540, 595, 614, 682
SfaNI GCATC 4 cut(s) 294, 456, 486, 502
SinI GGWCC 2 cut(s) 224, 248
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 2 cut(s) 360, 447
SsiI CCGC 2 cut(s) 9, 201
StyI CCWWGG 6 cut(s) 251, 283, 470, 663, 676, 769
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 35, 103
TaqII GACCGA 1 cut(s) 188
TasI AATT 2 cut(s) 360, 447
TfiI GAWTC 1 cut(s) 782
TscAI CASTG 4 cut(s) 32, 78, 87, 552
TseI GCWGC 8 cut(s) 68, 179, 233, 240, 578, 672, 735, 749
TspDTI ATGAA 5 cut(s) 332, 441, 548, 555, 671
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 4 cut(s) 32, 78, 87, 552
VpaK11BI GGWCC 2 cut(s) 224, 248
XapI RAATTY 1 cut(s) 360
XbaI TCTAGA 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmaJI CCTAGG 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.