Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Reverse (-)

74085388 .. 74085720

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG513300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAATTACGGCAAGTTGAAGTTGAACTCCGGCGAGGAGGGGAAAGGGGTTGTCTTGTTTGAACCCACGACGCCGGCTTCGAGTCTTTTAGAGAATGGTGAGGCGGCTATAGACCATGATGGGCGGCGGCGGGATCGAAGTCAGATTTCGAATGGAGTTCAAATTTGGGGCTGCATGCCTGCACGATACCTTCTTCCGATGTTTTGTTACAGTGGGCTGGCAGAGGTGAGGCTGGGATCGAAGTTCTTGTTCACTGATGTTTTTGTACACGTGATTCCGCGATCGAAGTTCTTGTTCACTAACCTTGGTTTGGATCAGATTGTTCGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.31

Weight (kDa)

8.68

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	104, 124, 127, 130, 278
AclWI	GGATC	3 cut(s)	141, 244, 321
AcsI	RAATTY	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	19, 25, 62, 161
AlwI	GGATC	3 cut(s)	141, 244, 321
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AsuHPI	GGTGA	2 cut(s)	110, 238
AsuII	TTCGAA	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	4 cut(s)	105, 125, 128, 172
BlsI	GCNGC	4 cut(s)	106, 126, 129, 173
Bpu14I	TTCGAA	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	30, 74
BslI	CCNNNNNNNGG	1 cut(s)	310
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	265
Bsp143I	GATC	5 cut(s)	133, 236, 281, 313, 327
BspACI	CCGC	5 cut(s)	104, 124, 127, 130, 278
BspFNI	CGCG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	141, 244, 321
BspT104I	TTCGAA	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	5 cut(s)	133, 236, 281, 313, 327
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	75, 176, 180, 219
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	5 cut(s)	136, 239, 284, 316, 330
BstMBI	GATC	5 cut(s)	133, 236, 281, 313, 327
BstMCI	CGRYCG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	217, 252
Cac8I	GCNNGC	4 cut(s)	75, 176, 180, 219
Cfr10I	RCCGGY	1 cut(s)	73
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	116, 175
CviJI	RGCY	5 cut(s)	77, 107, 171, 217, 232
CviKI_1	RGCY	5 cut(s)	77, 107, 171, 217, 232
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	5 cut(s)	135, 238, 283, 315, 329
DpnII	GATC	5 cut(s)	133, 236, 281, 313, 327
Eco130I	CCWWGG	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	119, 178
FaiI	YATR	3 cut(s)	110, 117, 176
FatI	CATG	2 cut(s)	115, 174
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	105, 125, 128, 172
Fsp4HI	GCNGC	4 cut(s)	105, 125, 128, 172
GluI	GCNGC	4 cut(s)	105, 125, 128, 172
GsaI	CCCAGC	1 cut(s)	236
HapII	CCGG	2 cut(s)	30, 74
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	119, 178
HinfI	GANTC	2 cut(s)	82, 274
HpaII	CCGG	2 cut(s)	30, 74
HphI	GGTGA	2 cut(s)	110, 238
Hpy166II	GTNNAC	3 cut(s)	252, 268, 297
Hpy188I	TCNGA	5 cut(s)	144, 198, 318, 327, 332
Hpy8I	GTNNAC	3 cut(s)	252, 268, 297
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	174, 182
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	119, 178
KroI	GCCGGC	1 cut(s)	73
KroNI	GCCGGC	1 cut(s)	75
Kzo9I	GATC	5 cut(s)	133, 236, 281, 313, 327
LpnPI	CCDG	5 cut(s)	43, 87, 192, 203, 218
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	5 cut(s)	135, 238, 283, 315, 329
MboI	GATC	5 cut(s)	133, 236, 281, 313, 327
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	2 cut(s)	4, 162
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	5 cut(s)	28, 31, 94, 217, 222
MroNI	GCCGGC	1 cut(s)	73
MspI	CCGG	2 cut(s)	30, 74
MvnI	CGCG	1 cut(s)	280
NaeI	GCCGGC	1 cut(s)	75
NdeII	GATC	5 cut(s)	133, 236, 281, 313, 327
NgoMIV	GCCGGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	119, 178
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdiI	GCCGGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	106, 126, 129, 173
Ple19I	CGATCG	1 cut(s)	284
PleI	GAGTC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	271
PspCI	CACGTG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	327
PvuI	CGATCG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SatI	GCNGC	4 cut(s)	105, 125, 128, 172
Sau3AI	GATC	5 cut(s)	133, 236, 281, 313, 327
SchI	GAGTC	1 cut(s)	91
SetI	ASST	4 cut(s)	192, 228, 273, 306
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	149
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	2 cut(s)	4, 162
SsiI	CCGC	5 cut(s)	104, 124, 127, 130, 278
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	5 cut(s)	80, 136, 149, 239, 284
TasI	AATT	2 cut(s)	4, 162
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	3 cut(s)	107, 127, 130
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	2 cut(s)	217, 259
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	217, 259
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.