Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009743

Physical Location & Seq

Genomic Coordinates Forward (+)

54976822 .. 54978063

Gene Structure 1242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATAACAATCCTTCCTAGGAACTTCGGAGTTCGTGAAGCGGTACTCGTCCAATGGTGGCCTAGTGTCCGCATTGATCTTCGTCACGGTGATGTGGGGGCTGCTGCCGAATGGGTGGTGATTATCAGTCTTGCCTTCGGGTCTTGGGGAAATTTTCTTGGAGGTGGGACAGTGATGGCCATCGACATCAAATCTGGTTTCGATGCAGCGCTAAGTTGGTTGAGATCGCAAGCAACGGTTGATCATGGGTCAGTATTCGGCGACATGGTTTGGTTACCAGGCAACGGCAGCTCGTGGAGATCAATGGCGGATCGAGATGTTTGGGTTTCCAGGTGGGTTTTGGTGGCATCGTCGTATCAAACTCTATGGAGACGGCGTCAAGGTGGGTCAAGACTTCTAGGGGTGCTGTGGTGGCCGGCGCGGTGCTTTCGACGATGCTGCACAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

10.55

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009743)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010900 RLG00000012391 RLG00000017553 RLG00000027918 RLG00000030085 RLG00000035089
rosa_multiflora	Rmu_sc0000718.1_g000008 Rmu_sc0001460.1_g000053 Rmu_sc0002244.1_g000019
rosa_roxburghii	Rroxscaffold_1G00062090 Rroxscaffold_2G00118890 Rroxscaffold_5G00362760
rosa_samantha	Rh1AG238600 Rh2AG513300 Rh4BG099300 Rh4DG096000 Rh4DG196600 Rh5AG351100 Rh5BG037300 Rh6BG314100 Rh7CG488000 Rh7DG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	421
AciI	CCGC	4 cut(s)	41, 70, 308, 421
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	2 cut(s)	177, 413
AcsI	RAATTY	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	45
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	277, 329
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	3 cut(s)	59, 177, 413
ApeKI	GCWGC	5 cut(s)	101, 104, 206, 288, 438
ApoI	RAATTY	1 cut(s)	151
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	211, 421
AsuHPI	GGTGA	2 cut(s)	101, 130
AvrII	CCTAGG	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	179
BauI	CACGAG	1 cut(s)	292
BbvI	GCAGC	5 cut(s)	88, 91, 218, 300, 425
BccI	CCATC	2 cut(s)	169, 188
BceAI	ACGGC	2 cut(s)	301, 389
BcgI	CGANNNNNNTGC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	279, 331
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	18, 63, 398
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	5 cut(s)	102, 105, 207, 289, 439
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	5 cut(s)	103, 106, 208, 290, 440
Bme1390I	CCNGG	2 cut(s)	279, 331
BmrFI	CCNGG	2 cut(s)	279, 331
BmsI	GCATC	3 cut(s)	193, 356, 425
BsaBI	GATNNNNATC	2 cut(s)	8, 179
BsaHI	GRCGYC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	415
Bse8I	GATNNNNATC	2 cut(s)	8, 179
BseBI	CCWGG	2 cut(s)	279, 331
BseDI	CCNNGG	1 cut(s)	17
BseJI	GATNNNNATC	2 cut(s)	8, 179
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	88, 91, 218, 300, 425
BsgI	GTGCAG	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	61, 179, 415
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	61, 179, 415
Bsp143I	GATC	5 cut(s)	76, 224, 241, 299, 310
BspACI	CCGC	4 cut(s)	41, 70, 308, 421
BspANI	GGCC	3 cut(s)	61, 179, 415
BspFNI	CGCG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	76, 224, 241, 299, 310
BssNI	GRCGYC	1 cut(s)	376
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	279, 331
Bst4CI	ACNGT	4 cut(s)	89, 172, 238, 445
BstACI	GRCGYC	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	231, 417
BstDEI	CTNAG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	211, 421
BstKTI	GATC	5 cut(s)	79, 227, 244, 302, 313
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	5 cut(s)	76, 224, 241, 299, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 412
BstNI	CCWGG	2 cut(s)	279, 331
BstPI	GGTNACC	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	277, 329
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	5 cut(s)	88, 91, 218, 300, 425
BsuRI	GGCC	3 cut(s)	61, 179, 415
BtsIMutI	CAGTG	2 cut(s)	177, 450
Cac8I	GCNNGC	2 cut(s)	231, 417
CfoI	GCGC	2 cut(s)	211, 421
Cfr10I	RCCGGY	1 cut(s)	415
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	245, 265
CviJI	RGCY	5 cut(s)	61, 101, 179, 291, 415
CviKI_1	RGCY	5 cut(s)	61, 101, 179, 291, 415
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	5 cut(s)	78, 226, 243, 301, 312
DpnII	GATC	5 cut(s)	76, 224, 241, 299, 310
EaeI	YGGCCR	2 cut(s)	177, 413
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	277, 329
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	2 cut(s)	248, 268
FaiI	YATR	3 cut(s)	246, 266, 367
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	244, 264
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	5 cut(s)	102, 105, 207, 289, 439
Fsp4HI	GCNGC	5 cut(s)	102, 105, 207, 289, 439
FspBI	CTAG	3 cut(s)	18, 63, 398
GlaI	GCGC	2 cut(s)	210, 420
GluI	GCNGC	5 cut(s)	102, 105, 207, 289, 439
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	61, 179, 415
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	211, 421
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	248, 268
Hin6I	GCGC	2 cut(s)	209, 419
HinP1I	GCGC	2 cut(s)	209, 419
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	2 cut(s)	101, 130
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	35, 314, 390
Hpy99I	CGWCG	2 cut(s)	355, 435
HpyAV	CCTTC	2 cut(s)	23, 145
HpyCH4III	ACNGT	4 cut(s)	89, 172, 238, 445
HpyCH4V	TGCA	3 cut(s)	206, 441, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 412
HpyF3I	CTNAG	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	248, 268
HspAI	GCGC	2 cut(s)	209, 419
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	76, 224, 241, 299, 310
LpnPI	CCDG	6 cut(s)	180, 264, 291, 316, 343, 429
Lsp1109I	GCAGC	5 cut(s)	88, 91, 218, 300, 425
LweI	GCATC	3 cut(s)	193, 356, 425
MaeI	CTAG	3 cut(s)	18, 63, 398
MaeIII	GTNAC	2 cut(s)	83, 273
MalI	GATC	5 cut(s)	78, 226, 243, 301, 312
MboI	GATC	5 cut(s)	76, 224, 241, 299, 310
MboII	GAAGA	1 cut(s)	71
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	1 cut(s)	151
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	2 cut(s)	279, 331
MvaI	CCWGG	2 cut(s)	279, 331
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	2 cut(s)	288, 412
NaeI	GCCGGC	1 cut(s)	417
NdeII	GATC	5 cut(s)	76, 224, 241, 299, 310
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	248, 268
NmuCI	GTSAC	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	417
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	5 cut(s)	103, 106, 208, 290, 440
Psp6I	CCWGG	2 cut(s)	277, 329
PspEI	GGTNACC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	277, 329
PsyI	GACNNNGTC	1 cut(s)	375
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	5 cut(s)	102, 105, 207, 289, 439
Sau3AI	GATC	5 cut(s)	76, 224, 241, 299, 310
ScrFI	CCNGG	2 cut(s)	279, 331
SetI	ASST	4 cut(s)	166, 293, 335, 385
SfaNI	GCATC	3 cut(s)	193, 356, 425
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	4 cut(s)	41, 70, 308, 421
SspMI	CTAG	3 cut(s)	18, 63, 398
StyD4I	CCNGG	2 cut(s)	277, 329
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	89, 172, 238, 445
TaqI	TCGA	4 cut(s)	183, 201, 313, 430
TasI	AATT	1 cut(s)	151
TscAI	CASTG	2 cut(s)	177, 450
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	5 cut(s)	101, 104, 206, 288, 438
Tsp45I	GTSAC	1 cut(s)	83
TspRI	CASTG	2 cut(s)	177, 450
Tth111I	GACNNNGTC	1 cut(s)	375
XapI	RAATTY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmaJI	CCTAGG	1 cut(s)	17
XspI	CTAG	3 cut(s)	18, 63, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.