RLG00000017553

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009743
Physical Location & Seq
Forward (+)
18176980 .. 18181083
4104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017553

Sequence Viewer

Length: 495 bp
ATGGCGGGGCTCCTCTCGGCGTCTAATCCCTCGACGGTGGTCTCAGTGCTTCAAGACCCTCTCTTTCGAGGAAGCTCTACAGTTTGGCTCATTGATCAGGGTGGCGAGTTTCTGGTTGGCAGCAGAGATGGCAAGACTGATGCTGCAGACGGCAGGGTTGCTGGCGGTGGAGGTGTCGCTGGCTTCGGATCTATGGTTGCTGGCGGCTCAAGTCCATGGTGGCTCGAGTTTGTCATGGACCATTGGCTTTTGGTTCCCGTTGTACTTCTTGGCATTATCCGGCATAGCTCCGGCCTCATCCTCGTCGCCTTTGCACGGCTAGCCAATCTCAGAGATGTGAATCAGAAGCTTCTTGCAGCCGAGGGATCCGAGGGCGGCATAGACGGCGTCTATTTGGGCTTATCGTACTTCTATTTCGGCGAGCTTAGTCATGTTGGGCTAGAAGAGGACGTAATCCAACGAGGCAACAACACTTGTTTGGGGTTTTATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.28

Weight (kDa)

4.71

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 165, 204, 375
AclWI GGATC 3 cut(s) 196, 360, 373
AcyI GRCGYC 2 cut(s) 20, 387
AfaI GTAC 2 cut(s) 264, 407
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 4 cut(s) 75, 288, 349, 424
AluI AGCT 4 cut(s) 75, 288, 349, 424
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 3 cut(s) 196, 360, 373
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 3 cut(s) 120, 143, 356
AspS9I GGNCC 1 cut(s) 238
AsuNHI GCTAGC 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 238
BamHI GGATCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 130, 132, 368
BccI CCATC 1 cut(s) 122
BceAI ACGGC 3 cut(s) 166, 332, 400
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 320, 440
BfmI CTRYAG 2 cut(s) 78, 144
BisI GCNGC 5 cut(s) 121, 144, 205, 357, 376
BlsI GCNGC 5 cut(s) 122, 145, 206, 358, 377
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 11, 255, 367
BmsI GCATC 1 cut(s) 130
BmtI GCTAGC 1 cut(s) 323
BoxI GACNNNNGTC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 2 cut(s) 20, 387
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 215, 360, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 215, 360, 369
BseGI GGATG 1 cut(s) 297
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 2 cut(s) 57, 343
BseXI GCAGC 3 cut(s) 130, 132, 368
BshFI GGCC 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 280, 291
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 94, 188, 365
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 4 cut(s) 5, 165, 204, 375
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 56, 342
BspLI GGNNCC 3 cut(s) 11, 255, 367
BspMAI CTGCAG 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 3 cut(s) 196, 360, 373
BspTNI GGTCTC 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 215, 360, 369
BssMI GATC 3 cut(s) 94, 188, 365
BssNI GRCGYC 2 cut(s) 20, 387
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 37, 82
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 20, 387
BstC8I GCNNGC 5 cut(s) 163, 181, 202, 321, 422
BstDEI CTNAG 3 cut(s) 43, 329, 425
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 3 cut(s) 97, 191, 368
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 94, 188, 365
BstMWI GCNNNNNNNGC 3 cut(s) 129, 320, 384
BstPAI GACNNNNGTC 1 cut(s) 38
BstSFI CTRYAG 2 cut(s) 78, 144
BstV1I GCAGC 3 cut(s) 130, 132, 368
BstX2I RGATCY 2 cut(s) 188, 365
BstYI RGATCY 2 cut(s) 188, 365
BsuRI GGCC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 5 cut(s) 163, 181, 202, 321, 422
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 2 cut(s) 9, 376
Csp6I GTAC 2 cut(s) 263, 406
CviAII CATG 3 cut(s) 216, 235, 431
CviQI GTAC 2 cut(s) 263, 406
DdeI CTNAG 3 cut(s) 43, 329, 425
DpnI GATC 3 cut(s) 96, 190, 367
DpnII GATC 3 cut(s) 94, 188, 365
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 219, 238, 434
FaiI YATR 6 cut(s) 194, 217, 236, 285, 380, 432
FatI CATG 3 cut(s) 215, 234, 430
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 121, 144, 205, 357, 376
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 5 cut(s) 121, 144, 205, 357, 376
FspBI CTAG 2 cut(s) 320, 440
GluI GCNGC 5 cut(s) 121, 144, 205, 357, 376
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 280, 291
HgaI GACGC 2 cut(s) 9, 376
Hin1I GRCGYC 2 cut(s) 20, 387
Hin1II CATG 3 cut(s) 219, 238, 434
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 340
HpaII CCGG 2 cut(s) 280, 291
Hpy188I TCNGA 4 cut(s) 188, 332, 345, 370
Hpy188III TCNNGA 1 cut(s) 53
Hpy99I CGWCG 2 cut(s) 37, 308
HpyCH4III ACNGT 2 cut(s) 37, 82
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 146, 314, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 320, 384
HpyF3I CTNAG 3 cut(s) 43, 329, 425
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 2 cut(s) 20, 387
Hsp92II CATG 3 cut(s) 219, 238, 434
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 188, 365
LmnI GCTCC 2 cut(s) 15, 293
LpnPI CCDG 8 cut(s) 83, 98, 139, 147, 165, 186, 293, 304
Lsp1109I GCAGC 3 cut(s) 130, 132, 368
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 320, 440
MaeII ACGT 1 cut(s) 450
MalI GATC 3 cut(s) 96, 190, 367
MboI GATC 3 cut(s) 94, 188, 365
MboII GAAGA 1 cut(s) 455
MflI RGATCY 2 cut(s) 188, 365
MhlI GDGCHC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 481
MspI CCGG 2 cut(s) 280, 291
MwoI GCNNNNNNNGC 3 cut(s) 129, 320, 384
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 94, 188, 365
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 3 cut(s) 219, 238, 434
NlaIV GGNNCC 3 cut(s) 11, 255, 367
NmeAIII GCCGAG 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 224
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 122, 145, 206, 358, 377
PshAI GACNNNNGTC 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 11, 255, 367
PspPI GGNCC 1 cut(s) 238
PspXI VCTCGAGB 1 cut(s) 224
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 188, 365
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 2 cut(s) 264, 407
RsaNI GTAC 2 cut(s) 263, 406
SatI GCNGC 5 cut(s) 121, 144, 205, 357, 376
Sau3AI GATC 3 cut(s) 94, 188, 365
Sau96I GGNCC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 12
SetI ASST 6 cut(s) 77, 175, 290, 351, 426, 453
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 2 cut(s) 78, 144
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 238
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 208, 224
SmoI CTYRAG 2 cut(s) 208, 224
SsiI CCGC 4 cut(s) 5, 165, 204, 375
SspMI CTAG 2 cut(s) 320, 440
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 37, 82
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 32, 67, 225
TatI WGTACW 1 cut(s) 262
TauI GCSGC 2 cut(s) 207, 378
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 51
TseI GCWGC 3 cut(s) 120, 143, 356
TspRI CASTG 1 cut(s) 51
Tth111I GACNNNGTC 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 2 cut(s) 320, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.