Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Reverse (-)

45036132 .. 45037533

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCATTCCGATCCTCTGACCCTGGTTACACAGACACATTGTTGCGAAATGCCATGAAGGCCTTCGAGTTTGCTGATACTTACAGAGGAGCTTCCAGTGATAATGCCAATGTTAGAGATGGTGTCTGCCCATTTTACTGTGATTTCGATGGTTACCAAGACGAATTGCTATGGAGTGCAGCCTGGATGAGGACAGTCACTCAGGATGGTGGTTACCATGACTACATACAAAACAATGGCAAAACTCTTGGTGCAGAGGACAATATAAACGAATTTGTCCTGGAAGGCAACATGTACAACCTTGAATCCTACAAATCATCGGCTGATAGCTTCATGTGCACATTAATACCGGAGTCATCATCCTCCCACATCGAGTACACTCCAGCCGGTCTCATCTACAAGCCAGGAGGCAGCAATCTACAACATGTAACTTCGATTTCATTCCTACTACTAGTTTACGCCAATTACCTTGCACGAACCTCGCAATCCCTCAACTGTGGAAACATAGATGTCAGTCCAACAACGCTGCGCCAAATCGCCAAAAAGCAGGTTGATTACATTTTGGGTGATAATCCAATGGGTTTGTCATACATGGTCGGATACAGCGACCATTATCCGCAGCGAATTCACCATCGTGGATCTTCTTTACCATCTATCAAGGATCATCCCCAACCCATTGCTTGCAAGGAAGGCTCAGTGTACTTCAATTCGTCAAACCCTAACCCTAATCCCCTTGTGGGAGCTCTAGTAGGAGGACCTGGAGAAGATGATGTCTATGAGGATGATCGCGCTGATTTTAGGAAGTCCGAACCGACCACATACATTAATGCACCATTTGTTGGTGTTTTGGCATACTTTGTGGCTAATCCCAGTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

294

Amino Acids

32.38

Weight (kDa)

4.77

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 283	1.3e-72	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	839
AccII	CGCG	1 cut(s)	789
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	3 cut(s)	6, 646, 669
AcsI	RAATTY	2 cut(s)	272, 624
AfaI	GTAC	3 cut(s)	296, 377, 701
AfiI	CCNNNNNNNGG	3 cut(s)	189, 737, 839
AflIII	ACRYGT	2 cut(s)	291, 424
AgsI	TTSAA	2 cut(s)	305, 706
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	5 cut(s)	22, 182, 279, 403, 757
AleI	CACNNNNGTG	1 cut(s)	633
AluBI	AGCT	3 cut(s)	92, 330, 743
AluI	AGCT	3 cut(s)	92, 330, 743
Alw21I	GWGCWC	2 cut(s)	341, 745
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	6, 646, 669
AoxI	GGCC	1 cut(s)	60
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	4 cut(s)	179, 411, 526, 619
ApoI	RAATTY	2 cut(s)	272, 624
AseI	ATTAAT	2 cut(s)	344, 825
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	531, 791
AspS9I	GGNCC	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	578, 620
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	341, 745
BbvI	GCAGC	4 cut(s)	191, 423, 513, 631
BccI	CCATC	5 cut(s)	113, 143, 200, 639, 658
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	5 cut(s)	24, 184, 281, 405, 759
BciVI	GTATCC	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	3 cut(s)	452, 746, 880
BfuAI	ACCTGC	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	180, 412, 527, 620
BlsI	GCNGC	4 cut(s)	181, 413, 528, 621
Bme1390I	CCNGG	5 cut(s)	24, 184, 281, 405, 759
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	755
BmrFI	CCNGG	5 cut(s)	24, 184, 281, 405, 759
BmrI	ACTGGG	1 cut(s)	864
BmuI	ACTGGG	1 cut(s)	864
BpmI	CTGGAG	2 cut(s)	366, 780
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 737, 839
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	96, 870
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	5 cut(s)	24, 184, 281, 405, 759
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	5 cut(s)	192, 211, 359, 664, 787
BseLI	CCNNNNNNNGG	3 cut(s)	189, 737, 839
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	215, 708
BseNI	ACTGG	2 cut(s)	96, 870
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	191, 423, 513, 631
BsgI	GTGCAG	2 cut(s)	198, 273
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	341, 745
BsiSI	CCGG	2 cut(s)	350, 387
BslI	CCNNNNNNNGG	3 cut(s)	189, 737, 839
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	341, 745
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	11, 638, 661, 784
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	214, 707
BspFNI	CGCG	1 cut(s)	789
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	3 cut(s)	6, 646, 669
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	96, 870
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	4 cut(s)	11, 638, 661, 784
Bst2UI	CCWGG	5 cut(s)	24, 184, 281, 405, 759
Bst4CI	ACNGT	3 cut(s)	140, 196, 497
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	201, 694
BstEII	GGTNACC	2 cut(s)	152, 212
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstF5I	GGATG	5 cut(s)	192, 211, 359, 664, 787
BstFNI	CGCG	1 cut(s)	789
BstHHI	GCGC	2 cut(s)	531, 791
BstKTI	GATC	4 cut(s)	14, 641, 664, 787
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	11, 638, 661, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 336, 690
BstNI	CCWGG	5 cut(s)	24, 184, 281, 405, 759
BstNSI	RCATGY	2 cut(s)	295, 428
BstPI	GGTNACC	2 cut(s)	152, 212
BstSCI	CCNGG	5 cut(s)	22, 182, 279, 403, 757
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	789
BstV1I	GCAGC	4 cut(s)	191, 423, 513, 631
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuI	GTATCC	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	5 cut(s)	192, 211, 359, 664, 787
BtsIMutI	CAGTG	2 cut(s)	103, 702
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	682
CfoI	GCGC	2 cut(s)	531, 791
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	295, 376, 700
CviAII	CATG	6 cut(s)	55, 218, 292, 334, 425, 592
CviQI	GTAC	3 cut(s)	295, 376, 700
DdeI	CTNAG	2 cut(s)	201, 694
DpnI	GATC	4 cut(s)	13, 640, 663, 786
DpnII	GATC	4 cut(s)	11, 638, 661, 784
Ecl136II	GAGCTC	1 cut(s)	743
Eco147I	AGGCCT	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	745
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	755
Eco53kI	GAGCTC	1 cut(s)	743
Eco91I	GGTNACC	2 cut(s)	152, 212
EcoICRI	GAGCTC	1 cut(s)	743
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	755
EcoO65I	GGTNACC	2 cut(s)	152, 212
EcoRI	GAATTC	1 cut(s)	624
EcoRII	CCWGG	5 cut(s)	22, 182, 279, 403, 757
EcoT38I	GRGCYC	1 cut(s)	745
FaeI	CATG	6 cut(s)	58, 221, 295, 337, 428, 595
FatI	CATG	6 cut(s)	54, 217, 291, 333, 424, 591
Fnu4HI	GCNGC	4 cut(s)	180, 412, 527, 620
FokI	GGATG	5 cut(s)	199, 218, 346, 651, 794
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	4 cut(s)	180, 412, 527, 620
FspBI	CTAG	3 cut(s)	452, 746, 880
GlaI	GCGC	2 cut(s)	530, 790
GluI	GCNGC	4 cut(s)	180, 412, 527, 620
GsuI	CTGGAG	2 cut(s)	366, 780
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	350, 387
HhaI	GCGC	2 cut(s)	531, 791
Hin1II	CATG	6 cut(s)	58, 221, 295, 337, 428, 595
Hin6I	GCGC	2 cut(s)	529, 789
HinP1I	GCGC	2 cut(s)	529, 789
HinfI	GANTC	2 cut(s)	305, 353
HpaII	CCGG	2 cut(s)	350, 387
HphI	GGTGA	2 cut(s)	578, 620
Hpy166II	GTNNAC	4 cut(s)	339, 378, 457, 700
Hpy188I	TCNGA	4 cut(s)	11, 19, 599, 808
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	4 cut(s)	339, 378, 457, 700
HpyAV	CCTTC	4 cut(s)	52, 73, 278, 683
HpyCH4III	ACNGT	3 cut(s)	140, 196, 497
HpyCH4V	TGCA	6 cut(s)	179, 254, 339, 473, 684, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 336, 690
HpyF3I	CTNAG	2 cut(s)	201, 694
Hsp92II	CATG	6 cut(s)	58, 221, 295, 337, 428, 595
HspAI	GCGC	2 cut(s)	529, 789
Kzo9I	GATC	4 cut(s)	11, 638, 661, 784
LmnI	GCTCC	2 cut(s)	89, 740
Lsp1109I	GCAGC	4 cut(s)	191, 423, 513, 631
MaeI	CTAG	3 cut(s)	452, 746, 880
MaeIII	GTNAC	5 cut(s)	26, 152, 196, 212, 427
MalI	GATC	4 cut(s)	13, 640, 663, 786
MboI	GATC	4 cut(s)	11, 638, 661, 784
MboII	GAAGA	2 cut(s)	633, 776
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	341, 745
MluCI	AATT	5 cut(s)	164, 272, 463, 624, 706
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	542, 577
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	2 cut(s)	344, 825
MslI	CAYNNNNRTG	1 cut(s)	633
MspI	CCGG	2 cut(s)	350, 387
MspR9I	CCNGG	5 cut(s)	24, 184, 281, 405, 759
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	5 cut(s)	24, 184, 281, 405, 759
MvnI	CGCG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	59, 336, 690
NdeII	GATC	4 cut(s)	11, 638, 661, 784
NlaIII	CATG	6 cut(s)	58, 221, 295, 337, 428, 595
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	2 cut(s)	295, 428
OliI	CACNNNNGTG	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	62
PciI	ACATGT	2 cut(s)	291, 424
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PctI	GAATGC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	839
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	181, 413, 528, 621
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	755
PscI	ACATGT	2 cut(s)	291, 424
PshBI	ATTAAT	2 cut(s)	344, 825
Psp124BI	GAGCTC	1 cut(s)	745
Psp5II	RGGWCCY	1 cut(s)	755
Psp6I	CCWGG	5 cut(s)	22, 182, 279, 403, 757
PspEI	GGTNACC	2 cut(s)	152, 212
PspGI	CCWGG	5 cut(s)	22, 182, 279, 403, 757
PspPI	GGNCC	1 cut(s)	755
PspPPI	RGGWCCY	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	638
RsaI	GTAC	3 cut(s)	296, 377, 701
RsaNI	GTAC	3 cut(s)	295, 376, 700
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	745
SaqAI	TTAA	2 cut(s)	344, 825
SatI	GCNGC	4 cut(s)	180, 412, 527, 620
Sau3AI	GATC	4 cut(s)	11, 638, 661, 784
Sau96I	GGNCC	1 cut(s)	755
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	5 cut(s)	24, 184, 281, 405, 759
SduI	GDGCHC	2 cut(s)	341, 745
SetI	ASST	8 cut(s)	94, 303, 332, 471, 482, 552, 745, 760
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	633
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	5 cut(s)	164, 272, 463, 624, 706
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	3 cut(s)	452, 746, 880
SstI	GAGCTC	1 cut(s)	745
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	5 cut(s)	22, 182, 279, 403, 757
TaaI	ACNGT	3 cut(s)	140, 196, 497
TaqI	TCGA	4 cut(s)	66, 147, 372, 434
TasI	AATT	5 cut(s)	164, 272, 463, 624, 706
TatI	WGTACW	3 cut(s)	294, 375, 699
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	344, 825
Tru9I	TTAA	2 cut(s)	344, 825
TscAI	CASTG	2 cut(s)	103, 702
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	179, 411, 526, 619
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	71, 322, 429
TspRI	CASTG	2 cut(s)	103, 702
Van91I	CCANNNNNTGG	1 cut(s)	839
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	755
VspI	ATTAAT	2 cut(s)	344, 825
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	2 cut(s)	272, 624
XceI	RCATGY	2 cut(s)	295, 428
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	3 cut(s)	452, 746, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.