Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Reverse (-)

47889963 .. 47891260

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACACAGCCAGGACTGTATATGCCGTGGACTCGCCGAATCCAGCTTCTGATGTTGCCGGTGAGACAGCTGCGGCGCTGTCAGCTTCCTCAATGGCATTCCGATCCTCTGACCCTGGTTACGCAGACACATTGTTGCGAAAAGCCATGAAGGTCTTCGAGTTTGCTGATACTTACAAAGGAGCTTACAGTGATAACGCCAATGTTAGAGATGGTGTCTGCCCATTTTACTGTGATTTCGATGGTTACCAAGACGAATTGCTATGGAGTGTAGCCTGGCTGAGGAGAGTCACTCAGGATGGTGGTTACCTTGACTACATACAAAACAATGGCAAAACTCATGGTGCAGAGGACAATATAAACGAATTTGGCTGGGACAACAAGCATGCTGGCCTCAATGTTCTAATCTCGAAGGAAGTCCTGGAAGGCAACATGTACAACCTTGAATCGTACAAATCATCGGCTGATAGCTTCATGTGCACATTAATACCGGAGTCATCATCCTCCCACATCGAGTACACTCCAGCCGGTCTCATCTACAAGCCAGGAGGCAGCAATCTGCAACATGTAACTTCGATTTCATTCCTACTACTAGTTTACGCCAATTACCTTGCACGAACCTCGCGATCCCTCAACTGTGGAAACATAGATGTCAGTCCAACAACGCTTCGCCAAATTGCCAAAAAGCAGGTTGATTACATTTTGGGTGATAATCCCATGGGTTTGCCATACATGGTCGGATACAGAGAATTCACCACCGTGGATCTTCTTTACCATCTATCAAGGATCATCCTCAACCCATTGCTTGCAAGGAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

273

Amino Acids

30.23

Weight (kDa)

5.11

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 250	3.6e-66	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccII	CGCG	1 cut(s)	625
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	99, 621, 771, 794
AcsI	RAATTY	2 cut(s)	365, 749
AfaI	GTAC	3 cut(s)	437, 452, 518
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflIII	ACRYGT	2 cut(s)	432, 565
AgsI	TTSAA	1 cut(s)	446
AhlI	ACTAGT	1 cut(s)	592
AjnI	CCWGG	5 cut(s)	11, 115, 275, 420, 544
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	5 cut(s)	47, 71, 86, 185, 471
AluI	AGCT	5 cut(s)	47, 71, 86, 185, 471
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	59, 536
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	4 cut(s)	99, 621, 771, 794
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	391, 816
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	71, 552
ApoI	RAATTY	2 cut(s)	365, 749
AseI	ATTAAT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	74, 719, 745
BaeGI	GKGCMC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	58, 564
BccI	CCATC	4 cut(s)	206, 236, 293, 783
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	5 cut(s)	13, 117, 277, 422, 546
BciVI	GTATCC	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	59, 536
BcuI	ACTAGT	1 cut(s)	592
BfaI	CTAG	2 cut(s)	593, 820
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	3 cut(s)	72, 75, 553
BlsI	GCNGC	3 cut(s)	73, 76, 554
Bme1390I	CCNGG	5 cut(s)	13, 117, 277, 422, 546
BmrFI	CCNGG	5 cut(s)	13, 117, 277, 422, 546
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	4 cut(s)	27, 115, 717, 759
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	2 cut(s)	59, 527
Bse3DI	GCAATG	1 cut(s)	800
BseBI	CCWGG	5 cut(s)	13, 117, 277, 422, 546
BseDI	CCNNGG	4 cut(s)	27, 115, 717, 759
BseGI	GGATG	3 cut(s)	304, 500, 789
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	272, 308
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	58, 564
BseYI	CCCAGC	1 cut(s)	372
BsgI	GTGCAG	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	393, 818
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	60, 491, 528
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	2 cut(s)	59, 536
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	393, 818
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	104, 626, 763, 786
Bsp19I	CCATGG	1 cut(s)	717
Bsp68I	TCGCGA	1 cut(s)	625
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	393, 818
BspCNI	CTCAG	2 cut(s)	273, 307
BspFNI	CGCG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	4 cut(s)	99, 621, 771, 794
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	800
BsrFI	RCCGGY	2 cut(s)	59, 527
BsrGI	TGTACA	1 cut(s)	435
BssAI	RCCGGY	2 cut(s)	59, 527
BssECI	CCNNGG	4 cut(s)	27, 115, 717, 759
BssMI	GATC	4 cut(s)	104, 626, 763, 786
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	5 cut(s)	13, 117, 277, 422, 546
Bst4CI	ACNGT	5 cut(s)	19, 191, 233, 638, 760
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	387, 391, 807
BstDEI	CTNAG	2 cut(s)	281, 294
BstDSI	CCRYGG	3 cut(s)	27, 717, 759
BstEII	GGTNACC	2 cut(s)	245, 305
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	304, 500, 789
BstFNI	CGCG	1 cut(s)	625
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	4 cut(s)	107, 629, 766, 789
BstMAI	GTCTC	2 cut(s)	59, 536
BstMBI	GATC	4 cut(s)	104, 626, 763, 786
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 477, 815
BstNI	CCWGG	5 cut(s)	13, 117, 277, 422, 546
BstNSI	RCATGY	3 cut(s)	389, 436, 569
BstPI	GGTNACC	2 cut(s)	245, 305
BstSCI	CCNGG	5 cut(s)	11, 115, 275, 420, 544
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	58, 564
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	2 cut(s)	393, 818
BtgI	CCRYGG	3 cut(s)	27, 717, 759
BtsCI	GGATG	3 cut(s)	304, 500, 789
BtsIMutI	CAGTG	1 cut(s)	196
BtuMI	TCGCGA	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	387, 391, 807
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	2 cut(s)	59, 527
Csp6I	GTAC	3 cut(s)	436, 451, 517
CviAII	CATG	8 cut(s)	148, 341, 386, 433, 475, 566, 718, 733
CviQI	GTAC	3 cut(s)	436, 451, 517
DdeI	CTNAG	2 cut(s)	281, 294
DpnI	GATC	4 cut(s)	106, 628, 765, 788
DpnII	GATC	4 cut(s)	104, 626, 763, 786
Eco130I	CCWWGG	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	536
Eco91I	GGTNACC	2 cut(s)	245, 305
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoO65I	GGTNACC	2 cut(s)	245, 305
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	5 cut(s)	11, 115, 275, 420, 544
EcoT14I	CCWWGG	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	8 cut(s)	151, 344, 389, 436, 478, 569, 721, 736
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	8 cut(s)	147, 340, 385, 432, 474, 565, 717, 732
Fnu4HI	GCNGC	3 cut(s)	72, 75, 553
FokI	GGATG	3 cut(s)	311, 487, 776
Fsp4HI	GCNGC	3 cut(s)	72, 75, 553
FspBI	CTAG	2 cut(s)	593, 820
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	72, 75, 553
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	393, 818
HapII	CCGG	3 cut(s)	60, 491, 528
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	8 cut(s)	151, 344, 389, 436, 478, 569, 721, 736
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	5 cut(s)	32, 40, 288, 446, 494
HpaII	CCGG	3 cut(s)	60, 491, 528
HphI	GGTGA	3 cut(s)	74, 719, 745
Hpy166II	GTNNAC	4 cut(s)	31, 480, 519, 598
Hpy188I	TCNGA	4 cut(s)	52, 104, 112, 740
Hpy188III	TCNNGA	3 cut(s)	296, 409, 624
Hpy8I	GTNNAC	4 cut(s)	31, 480, 519, 598
HpyAV	CCTTC	4 cut(s)	145, 406, 419, 808
HpyCH4III	ACNGT	5 cut(s)	19, 191, 233, 638, 760
HpyCH4V	TGCA	5 cut(s)	347, 480, 562, 614, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 477, 815
HpyF3I	CTNAG	2 cut(s)	281, 294
Hsp92II	CATG	8 cut(s)	151, 344, 389, 436, 478, 569, 721, 736
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	104, 626, 763, 786
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	58, 564
MaeI	CTAG	2 cut(s)	593, 820
MaeIII	GTNAC	5 cut(s)	119, 245, 289, 305, 568
MalI	GATC	4 cut(s)	106, 628, 765, 788
MboI	GATC	4 cut(s)	104, 626, 763, 786
MboII	GAAGA	2 cut(s)	148, 758
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	5 cut(s)	257, 365, 604, 675, 749
MlyI	GAGTC	3 cut(s)	26, 297, 503
MmeI	TCCRAC	2 cut(s)	683, 718
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	60, 491, 528
MspR9I	CCNGG	5 cut(s)	13, 117, 277, 422, 546
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	5 cut(s)	13, 117, 277, 422, 546
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	3 cut(s)	83, 477, 815
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	4 cut(s)	104, 626, 763, 786
NlaIII	CATG	8 cut(s)	151, 344, 389, 436, 478, 569, 721, 736
NmuCI	GTSAC	1 cut(s)	289
NruI	TCGCGA	1 cut(s)	625
NspI	RCATGY	3 cut(s)	389, 436, 569
OliI	CACNNNNGTG	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	818
PciI	ACATGT	2 cut(s)	432, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	40, 446
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	73, 76, 554
PleI	GAGTC	3 cut(s)	26, 296, 502
PpsI	GAGTC	3 cut(s)	26, 296, 502
PscI	ACATGT	2 cut(s)	432, 565
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	5 cut(s)	11, 115, 275, 420, 544
PspEI	GGTNACC	2 cut(s)	245, 305
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	5 cut(s)	11, 115, 275, 420, 544
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	625
RsaI	GTAC	3 cut(s)	437, 452, 518
RsaNI	GTAC	3 cut(s)	436, 451, 517
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	3 cut(s)	72, 75, 553
Sau3AI	GATC	4 cut(s)	104, 626, 763, 786
SchI	GAGTC	3 cut(s)	26, 297, 503
ScrFI	CCNGG	5 cut(s)	13, 117, 277, 422, 546
SduI	GDGCHC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	758
SpeI	ACTAGT	1 cut(s)	592
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	257, 365, 604, 675, 749
SseBI	AGGCCT	1 cut(s)	818
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	593, 820
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	5 cut(s)	11, 115, 275, 420, 544
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	5 cut(s)	19, 191, 233, 638, 760
TaqI	TCGA	5 cut(s)	159, 240, 410, 513, 575
TasI	AATT	5 cut(s)	257, 365, 604, 675, 749
TatI	WGTACW	2 cut(s)	435, 516
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	40, 446
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	71, 552
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	164, 463, 570
TspRI	CASTG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	365, 749
XceI	RCATGY	3 cut(s)	389, 436, 569
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	593, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.