Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Forward (+)

24705144 .. 24706619

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACACAGCTAGGACTGTATATGTCGTGGACTCACCGAATCCAGCTTCTGATGTTGCCGGTGAGACAGCTGCGGCGCTGTCAGCTTCCTCAATGGCATTCCGATCCTATGACCCTAGTTACGCAGACATATTGTTGCGAAATGCCATGAAGGCCTTCGAGTTTGCTGATACTTATAGAGGAGCTTACAGTGATAATGCCAATGTTAGAGATGGTGTCTGCCCATTTTACTGTGATTTCGATGGTTACCAAGAAGTCCTGGAAGGCAACATGTACAACCTTGAATCCTACAAATCATCGGCTGATAGCTTCATGTGCACATTAATACCGGAATCATCATCCTCCCACATCGAGTTTTACGCCAATTACCTTGCACGAACCTCGCGATCCCTCAACTGTGGAAACATAGATGTCAGTCCAACAACGCTTCGCCAAATCGCCAAAAAGCAGGTTGATTACATTTTGGGTGATAATCCAATGGGTTTGTCATACATGGTCGGATACAGCGACCATTATCCACAGCGAATTCACCACCGTGGATCTTCTTTACCATCTATCAAGGATCATCCCCAACCCATTGCTTGCAAGGAAGGCTCAGTGTACTTCAATTCGTCAAGCCCTAACCCTAATCCCCTTGTGGGAGCCCTAGTAGGAGGACCTGTAGAAGATGATGTCTATGAGGATGATCGCGCTGATTTTAGGAAGTCTGAACCGACCACATACATTGATGCACCATTTGTTGGTGTTTTGGCATACTTTGTGGCTAATCCCAGTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

260

Amino Acids

28.58

Weight (kDa)

4.62

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 84	2.6e-20	Glycosyl hydrolase family 9
Glyco_hydro_9	PF00759	94 - 250	2.1e-38	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccII	CGCG	2 cut(s)	385, 690
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	99, 381, 547, 570
AcsI	RAATTY	1 cut(s)	525
AfaI	GTAC	2 cut(s)	275, 602
AfiI	CCNNNNNNNGG	2 cut(s)	638, 740
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	284, 607
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	11, 47, 71, 86, 185, 309
AluI	AGCT	6 cut(s)	11, 47, 71, 86, 185, 309
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	4 cut(s)	99, 381, 547, 570
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	153
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	525
AseI	ATTAAT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	79, 692
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	4 cut(s)	27, 74, 479, 521
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	206, 236, 559
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	4 cut(s)	12, 117, 647, 781
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	494
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	72, 75
BlsI	GCNGC	2 cut(s)	73, 76
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	1 cut(s)	718
BmuI	ACTGGG	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	535
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	633, 645, 663, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	638, 740
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	338, 565, 688
BseLI	CCNNNNNNNGG	2 cut(s)	638, 740
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	385, 690
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	60, 329
BslI	CCNNNNNNNGG	2 cut(s)	638, 740
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	320, 646
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	104, 386, 539, 562, 685
Bsp68I	TCGCGA	1 cut(s)	385
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	608
BspFNI	CGCG	2 cut(s)	385, 690
BspLI	GGNNCC	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	4 cut(s)	99, 381, 547, 570
BsrDI	GCAATG	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	771
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	5 cut(s)	104, 386, 539, 562, 685
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	19, 191, 233, 398, 536
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	1 cut(s)	595
BstDSI	CCRYGG	1 cut(s)	535
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	3 cut(s)	338, 565, 688
BstFNI	CGCG	2 cut(s)	385, 690
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 692
BstKTI	GATC	5 cut(s)	107, 389, 542, 565, 688
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	104, 386, 539, 562, 685
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 152, 315, 591
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	274
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	2 cut(s)	385, 690
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	3 cut(s)	338, 565, 688
BtsIMutI	CAGTG	2 cut(s)	196, 603
BtuMI	TCGCGA	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	79, 692
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	2 cut(s)	274, 601
CspCI	CAANNNNNGTGG	2 cut(s)	706, 741
CviAII	CATG	4 cut(s)	148, 271, 313, 493
CviQI	GTAC	2 cut(s)	274, 601
DdeI	CTNAG	1 cut(s)	595
DpnI	GATC	5 cut(s)	106, 388, 541, 564, 687
DpnII	GATC	5 cut(s)	104, 386, 539, 562, 685
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	646
FaeI	CATG	4 cut(s)	151, 274, 316, 496
FatI	CATG	4 cut(s)	147, 270, 312, 492
Fnu4HI	GCNGC	2 cut(s)	72, 75
FokI	GGATG	3 cut(s)	325, 552, 695
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	2 cut(s)	72, 75
FspBI	CTAG	4 cut(s)	12, 117, 647, 781
GlaI	GCGC	2 cut(s)	78, 691
GluI	GCNGC	2 cut(s)	72, 75
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	60, 329
HhaI	GCGC	2 cut(s)	79, 692
Hin1II	CATG	4 cut(s)	151, 274, 316, 496
Hin6I	GCGC	2 cut(s)	77, 690
HinP1I	GCGC	2 cut(s)	77, 690
HinfI	GANTC	4 cut(s)	32, 40, 284, 332
HpaII	CCGG	2 cut(s)	60, 329
HphI	GGTGA	4 cut(s)	27, 74, 479, 521
Hpy166II	GTNNAC	3 cut(s)	31, 318, 601
Hpy188I	TCNGA	4 cut(s)	52, 104, 500, 709
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	3 cut(s)	31, 318, 601
HpyAV	CCTTC	4 cut(s)	145, 166, 257, 584
HpyCH4III	ACNGT	5 cut(s)	19, 191, 233, 398, 536
HpyCH4V	TGCA	4 cut(s)	318, 374, 585, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 152, 315, 591
HpyF3I	CTNAG	1 cut(s)	595
Hsp92II	CATG	4 cut(s)	151, 274, 316, 496
HspAI	GCGC	2 cut(s)	77, 690
Kzo9I	GATC	5 cut(s)	104, 386, 539, 562, 685
LmnI	GCTCC	2 cut(s)	182, 641
LpnPI	CCDG	7 cut(s)	57, 73, 245, 272, 342, 434, 672
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	12, 117, 647, 781
MaeIII	GTNAC	2 cut(s)	119, 245
MalI	GATC	5 cut(s)	106, 388, 541, 564, 687
MboI	GATC	5 cut(s)	104, 386, 539, 562, 685
MboII	GAAGA	2 cut(s)	534, 677
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	320, 646
MluCI	AATT	3 cut(s)	364, 525, 607
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	443, 478
MnlI	CCTC	7 cut(s)	100, 173, 352, 391, 401, 647, 673
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	60, 329
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	385, 690
MwoI	GCNNNNNNNGC	4 cut(s)	83, 152, 315, 591
NdeII	GATC	5 cut(s)	104, 386, 539, 562, 685
NlaIII	CATG	4 cut(s)	151, 274, 316, 496
NlaIV	GGNNCC	1 cut(s)	643
NruI	TCGCGA	1 cut(s)	385
NspI	RCATGY	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	2 cut(s)	382, 504
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	40, 284, 332
PflMI	CCANNNNNTGG	1 cut(s)	740
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	73, 76
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	270
PshBI	ATTAAT	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	258
PspEI	GGTNACC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	385
RsaI	GTAC	2 cut(s)	275, 602
RsaNI	GTAC	2 cut(s)	274, 601
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	2 cut(s)	72, 75
Sau3AI	GATC	5 cut(s)	104, 386, 539, 562, 685
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	320, 646
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	364, 525, 607
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	4 cut(s)	12, 117, 647, 781
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	19, 191, 233, 398, 536
TaqI	TCGA	3 cut(s)	159, 240, 351
TasI	AATT	3 cut(s)	364, 525, 607
TatI	WGTACW	2 cut(s)	273, 600
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	40, 284, 332
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	2 cut(s)	196, 603
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	164, 301
TspRI	CASTG	2 cut(s)	196, 603
Van91I	CCANNNNNTGG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	323
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	4 cut(s)	12, 117, 647, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.