Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Forward (+)

24302255 .. 24303118

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG155900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACACAGCCAGGACTATATATGCCGTGGACTCGCCGAATCCAGCTTCTGATGTTGCCGGTGAGACAGCTGCGGCACTGTCAGTTTCCTCAATGGCATTCCGATCCGCTAACCTAGGTTACGCAGACACATTGTTGCGAAATGCCATGAAGGCCTTCGAGTTTGCTGATACTTACAGAGGAGCTTACAGTGATAATGCCAATGTTAGAGATGGTGTCTGCCCATTTTACTGTGATTTCGATGGTTACCAAGACGAATTGCTATGGAGTGCAGCCAGGCTGAGGAGAGCCACTCAGGATGGTGGTTACCTTGACAACATACAAAACAATGGCAAAACTCTTGGTGCAGAGGACAATATAAACGAATTCGGTTGGGACAACAAGCATGCTGGCCTCAATGTTCTAATCTCCCAGATTTGGTCAAACTTCCCAGATTATTATAGGAATCTCTACGATATAAATGATGTGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

158

Amino Acids

17.54

Weight (kDa)

4.31

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	1 - 141	6.1e-37	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 108
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	282, 417
AjnI	CCWGG	2 cut(s)	11, 275
AluBI	AGCT	3 cut(s)	47, 71, 185
AluI	AGCT	3 cut(s)	47, 71, 185
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	153, 391
ApeKI	GCWGC	2 cut(s)	71, 272
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	115
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	58, 284
BccI	CCATC	3 cut(s)	206, 236, 293
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	2 cut(s)	13, 277
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	72, 75, 273
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	3 cut(s)	73, 76, 274
Bme1390I	CCNGG	2 cut(s)	13, 277
BmrFI	CCNGG	2 cut(s)	13, 277
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	27, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 417
Bse118I	RCCGGY	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	13, 277
BseDI	CCNNGG	2 cut(s)	27, 115
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	282, 417
BseMII	CTCAG	2 cut(s)	272, 308
BseRI	GAGGAG	2 cut(s)	195, 298
BseXI	GCAGC	2 cut(s)	58, 284
BsgI	GTGCAG	2 cut(s)	291, 366
BshFI	GGCC	2 cut(s)	155, 393
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	282, 417
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	155, 393
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	2 cut(s)	74, 108
BspANI	GGCC	2 cut(s)	155, 393
BspCNI	CTCAG	2 cut(s)	273, 307
BspHI	TCATGA	1 cut(s)	473
BspPI	GGATC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	27, 115
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	13, 277
Bst4CI	ACNGT	3 cut(s)	81, 191, 233
BstC8I	GCNNGC	2 cut(s)	387, 391
BstDEI	CTNAG	2 cut(s)	281, 294
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	2 cut(s)	245, 305
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	13, 277
BstNSI	RCATGY	1 cut(s)	389
BstPI	GGTNACC	2 cut(s)	245, 305
BstSCI	CCNGG	2 cut(s)	11, 275
BstV1I	GCAGC	2 cut(s)	58, 284
BsuRI	GGCC	2 cut(s)	155, 393
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	77, 196
Cac8I	GCNNGC	2 cut(s)	387, 391
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	59
CviAII	CATG	3 cut(s)	148, 386, 474
CviJI	RGCY	9 cut(s)	11, 47, 71, 155, 185, 275, 280, 290, 393
CviKI_1	RGCY	9 cut(s)	11, 47, 71, 155, 185, 275, 280, 290, 393
DdeI	CTNAG	2 cut(s)	281, 294
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	155
Eco91I	GGTNACC	2 cut(s)	245, 305
EcoO65I	GGTNACC	2 cut(s)	245, 305
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	11, 275
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	3 cut(s)	151, 389, 477
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	147, 385, 473
Fnu4HI	GCNGC	3 cut(s)	72, 75, 273
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	72, 75, 273
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	72, 75, 273
HaeIII	GGCC	2 cut(s)	155, 393
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	151, 389, 477
HinfI	GANTC	3 cut(s)	32, 40, 445
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	52, 104
Hpy188III	TCNNGA	2 cut(s)	296, 474
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	145, 166
HpyCH4III	ACNGT	3 cut(s)	81, 191, 233
HpyCH4V	TGCA	2 cut(s)	272, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	281, 294
Hsp92II	CATG	3 cut(s)	151, 389, 477
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	9 cut(s)	25, 57, 73, 262, 281, 289, 375, 425, 444
Lsp1109I	GCAGC	2 cut(s)	58, 284
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	119, 245, 305
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MluCI	AATT	2 cut(s)	257, 365
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	5 cut(s)	100, 173, 276, 343, 404
MroXI	GAANNNNTTC	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	13, 277
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	2 cut(s)	13, 277
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	151, 389, 477
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	40, 445
PkrI	GCNGC	3 cut(s)	73, 76, 274
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	11, 275
PspEI	GGTNACC	2 cut(s)	245, 305
PspGI	CCWGG	2 cut(s)	11, 275
PstNI	CAGNNNCTG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	71
SatI	GCNGC	3 cut(s)	72, 75, 273
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	13, 277
SetI	ASST	6 cut(s)	49, 73, 117, 121, 187, 312
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	257, 365
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	74, 108
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	11, 275
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	81, 191, 233
TaqI	TCGA	2 cut(s)	159, 240
TasI	AATT	2 cut(s)	257, 365
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	40, 445
TscAI	CASTG	2 cut(s)	84, 196
TseI	GCWGC	2 cut(s)	71, 272
TspDTI	ATGAA	2 cut(s)	164, 462
TspRI	CASTG	2 cut(s)	84, 196
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	389
XmaJI	CCTAGG	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.