Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005400.1

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Reverse (-)

151483 .. 152444

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005400.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgcgtacctggctgaggagagtcactcaggatggtggttaccttgactacatacaaaacaatggcaaaactcttggtgcagaggacaatataaacgaatttggttgggacaacaagcatgctggcctcaatgttctaatctccaaggaagtcctggaaggcaacatgtacaaccttgaatcctacaaatcatcggctgatagcttcatgtgcacattaataccggagtcatcatcctcccacatagagtacactccagccggtctcatctacaagccaggaggcagcaatctgcaacatgtaacttccatttcattcctactactagtttacgccaattaccttgcacgaacctcgcgatccctcaactgtggcaacatagatgtcagtccaacaacgcttcgccaaatcgccaaaaagcaggttgattacattttgggtgataatccaatgggtttgtcatacatggttggatacagcgaccattatccgcagcgaattcaccaccgtggatcttctttaccatctatcaaggatcacccccaacccattgcttgcaaggaaggttcagtgtacttcaattcgtcaaaccctgaccctaatccccttgtgggagccctagtaggaggacctggagaagatgatgtctatgaggatgatcgcgctgattttaggaagtccgaaccgaccacatacattaatgcaccatttgttggtgttttggcatactttgtggctaatcccagtccaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

251

Amino Acids

27.75

Weight (kDa)

5.45

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccII	CGCG	2 cut(s)	358, 663
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	3 cut(s)	354, 520, 543
AcsI	RAATTY	2 cut(s)	98, 498
AfaI	GTAC	4 cut(s)	7, 170, 251, 575
AfiI	CCNNNNNNNGG	3 cut(s)	15, 611, 713
AflIII	ACRYGT	2 cut(s)	165, 298
AgsI	TTSAA	2 cut(s)	179, 580
AhlI	ACTAGT	1 cut(s)	325
AjnI	CCWGG	4 cut(s)	8, 153, 277, 631
AleI	CACNNNNGTG	1 cut(s)	507
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	3 cut(s)	354, 520, 543
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	285, 493
ApoI	RAATTY	2 cut(s)	98, 498
AseI	ATTAAT	2 cut(s)	218, 699
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	3 cut(s)	452, 494, 530
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	297, 505
BccI	CCATC	2 cut(s)	26, 532
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	4 cut(s)	10, 155, 279, 633
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	269
BcuI	ACTAGT	1 cut(s)	325
BfaI	CTAG	3 cut(s)	326, 620, 754
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	286, 494
BlsI	GCNGC	2 cut(s)	287, 495
Bme1390I	CCNGG	4 cut(s)	10, 155, 279, 633
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	4 cut(s)	10, 155, 279, 633
BmrI	ACTGGG	1 cut(s)	738
BmuI	ACTGGG	1 cut(s)	738
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	2 cut(s)	240, 654
Bpu10I	CCTNAGC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	144, 508
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 611, 713
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	4 cut(s)	10, 155, 279, 633
BseDI	CCNNGG	2 cut(s)	144, 508
BseGI	GGATG	3 cut(s)	37, 233, 661
BseLI	CCNNNNNNNGG	3 cut(s)	15, 611, 713
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	5, 41
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	297, 505
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	358, 663
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	224, 261
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	15, 611, 713
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	215, 619
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	359, 512, 535, 658
Bsp68I	TCGCGA	1 cut(s)	358
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	6, 40
BspFNI	CGCG	2 cut(s)	358, 663
BspLI	GGNNCC	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	3 cut(s)	354, 520, 543
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	744
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	144, 508
BssMI	GATC	4 cut(s)	359, 512, 535, 658
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	4 cut(s)	10, 155, 279, 633
Bst4CI	ACNGT	2 cut(s)	371, 509
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	120, 124, 556
BstDEI	CTNAG	2 cut(s)	14, 27
BstDSI	CCRYGG	1 cut(s)	508
BstEII	GGTNACC	1 cut(s)	38
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	37, 233, 661
BstFNI	CGCG	2 cut(s)	358, 663
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	4 cut(s)	362, 515, 538, 661
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	359, 512, 535, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 210
BstNI	CCWGG	4 cut(s)	10, 155, 279, 633
BstNSI	RCATGY	3 cut(s)	122, 169, 302
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	4 cut(s)	8, 153, 277, 631
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	2 cut(s)	358, 663
BstV1I	GCAGC	2 cut(s)	297, 505
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	37, 233, 661
BtsIMutI	CAGTG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	120, 124, 556
CfoI	GCGC	1 cut(s)	665
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	629
Csp6I	GTAC	4 cut(s)	6, 169, 250, 574
CviAII	CATG	5 cut(s)	119, 166, 208, 299, 466
CviJI	RGCY	8 cut(s)	13, 126, 197, 204, 260, 277, 617, 737
CviKI_1	RGCY	8 cut(s)	13, 126, 197, 204, 260, 277, 617, 737
CviQI	GTAC	4 cut(s)	6, 169, 250, 574
DdeI	CTNAG	2 cut(s)	14, 27
DpnI	GATC	4 cut(s)	361, 514, 537, 660
DpnII	GATC	4 cut(s)	359, 512, 535, 658
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	629
EcoO65I	GGTNACC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	4 cut(s)	8, 153, 277, 631
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	122, 169, 211, 302, 469
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	5 cut(s)	118, 165, 207, 298, 465
Fnu4HI	GCNGC	2 cut(s)	286, 494
FokI	GGATG	3 cut(s)	44, 220, 668
FriOI	GRGCYC	1 cut(s)	619
Fsp4HI	GCNGC	2 cut(s)	286, 494
FspBI	CTAG	3 cut(s)	326, 620, 754
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	2 cut(s)	286, 494
GsuI	CTGGAG	2 cut(s)	240, 654
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	224, 261
HhaI	GCGC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	122, 169, 211, 302, 469
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HinfI	GANTC	3 cut(s)	21, 179, 227
HpaII	CCGG	2 cut(s)	224, 261
HphI	GGTGA	3 cut(s)	452, 494, 530
Hpy166II	GTNNAC	4 cut(s)	213, 252, 331, 574
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	2 cut(s)	29, 357
Hpy8I	GTNNAC	4 cut(s)	213, 252, 331, 574
HpyAV	CCTTC	2 cut(s)	152, 557
HpyCH4III	ACNGT	2 cut(s)	371, 509
HpyCH4V	TGCA	6 cut(s)	80, 213, 295, 347, 558, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 210
HpyF3I	CTNAG	2 cut(s)	14, 27
Hsp92II	CATG	5 cut(s)	122, 169, 211, 302, 469
HspAI	GCGC	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	359, 512, 535, 658
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	2 cut(s)	297, 505
MaeI	CTAG	3 cut(s)	326, 620, 754
MaeIII	GTNAC	3 cut(s)	22, 38, 301
MalI	GATC	4 cut(s)	361, 514, 537, 660
MboI	GATC	4 cut(s)	359, 512, 535, 658
MboII	GAAGA	2 cut(s)	507, 650
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	215, 619
MluCI	AATT	4 cut(s)	98, 337, 498, 580
MlyI	GAGTC	2 cut(s)	30, 236
MmeI	TCCRAC	2 cut(s)	416, 451
MnlI	CCTC	9 cut(s)	9, 76, 137, 247, 275, 364, 374, 620, 646
MseI	TTAA	2 cut(s)	218, 699
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	224, 261
MspR9I	CCNGG	4 cut(s)	10, 155, 279, 633
MvaI	CCWGG	4 cut(s)	10, 155, 279, 633
MvnI	CGCG	2 cut(s)	358, 663
MwoI	GCNNNNNNNGC	2 cut(s)	10, 210
NdeII	GATC	4 cut(s)	359, 512, 535, 658
NlaIII	CATG	5 cut(s)	122, 169, 211, 302, 469
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	22
NruI	TCGCGA	1 cut(s)	358
NspI	RCATGY	3 cut(s)	122, 169, 302
OliI	CACNNNNGTG	1 cut(s)	507
PaeI	GCATGC	1 cut(s)	122
PciI	ACATGT	2 cut(s)	165, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	287, 495
PleI	GAGTC	2 cut(s)	29, 235
PpsI	GAGTC	2 cut(s)	29, 235
PpuMI	RGGWCCY	1 cut(s)	629
PscI	ACATGT	2 cut(s)	165, 298
PshBI	ATTAAT	2 cut(s)	218, 699
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	4 cut(s)	8, 153, 277, 631
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	4 cut(s)	8, 153, 277, 631
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	1 cut(s)	629
PspPPI	RGGWCCY	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	512
RruI	TCGCGA	1 cut(s)	358
RsaI	GTAC	4 cut(s)	7, 170, 251, 575
RsaNI	GTAC	4 cut(s)	6, 169, 250, 574
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	218, 699
SatI	GCNGC	2 cut(s)	286, 494
Sau3AI	GATC	4 cut(s)	359, 512, 535, 658
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	2 cut(s)	30, 236
ScrFI	CCNGG	4 cut(s)	10, 155, 279, 633
SduI	GDGCHC	2 cut(s)	215, 619
SetI	ASST	9 cut(s)	11, 45, 177, 206, 345, 356, 426, 568, 634
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	325
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	4 cut(s)	98, 337, 498, 580
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	326, 620, 754
StyD4I	CCNGG	4 cut(s)	8, 153, 277, 631
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	371, 509
TasI	AATT	4 cut(s)	98, 337, 498, 580
TatI	WGTACW	3 cut(s)	168, 249, 573
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	218, 699
Tru9I	TTAA	2 cut(s)	218, 699
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	285, 493
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	196, 303
TspRI	CASTG	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	713
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	629
VspI	ATTAAT	2 cut(s)	218, 699
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	2 cut(s)	98, 498
XceI	RCATGY	3 cut(s)	122, 169, 302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	3 cut(s)	326, 620, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.