Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001833.1

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Forward (+)

3654 .. 5148

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001833.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggatacagccaggactgtatatgccgtggactcgccgaatccagcttctgatgttgctggtgagacagctgcggcgctgtcagcttcctcaatggcattccgatactctgaccctggttacgcagacacattgttgcgaaatgccatgaaggtcttcgagtttgctgatacttacagaggagcttacagtgataatgctaatgttagagatggtgtttgcccattttattgtgatttcgatggttaccaagacgaattgctatggagtgcagcctggctgaggagagtcactcaggatggtggttaccttgactacatacaaaacaatggcaaaactcttggtgcagaggacaatataaacgaatttggttgggacaacaagcatgctggcctcaatgttctaatctccaaggaagtcctggaaggcaacatgtacaaccttgaatcctacaaatcatcggctgatagcttcatgtgcacattaataccggagtcatcatcctcccacatcgagtacactccagccggtctcatctacaagccaggaggcagcaatctgcaacatgtaacttccatttcattcctacttctagtttacgccaattaccttgcacgaacctcgcgatccctcaactgtggaaacatagatgtcagtccaacaacgcttcgccaaatcgccaaaaagcaggttgattacattttgggtgataatccaatgggtttgtcatacatggtcggatacagcgaccattatccacagcgaattcaccaccgtggatcttctttaccatctatcaaggatcatccccaacccattgcttgcaaggaaggctcagtgtacttcaattcgtcaaaccctaaccctaatccccttgtgggagccctagtaggaggacctggagaagatgatgtctatgaggatgatcgcgctgattttaggaagtctgaaccgaccacatacattaatgcaccatttgttggtgttttggcatactttgtggctaatcccagtccaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

340

Amino Acids

37.34

Weight (kDa)

4.79

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccB7I	CCANNNNNTGG	1 cut(s)	980
AccII	CGCG	2 cut(s)	625, 930
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	3 cut(s)	621, 787, 810
AcsI	RAATTY	2 cut(s)	365, 765
AfaI	GTAC	3 cut(s)	437, 518, 842
AfiI	CCNNNNNNNGG	3 cut(s)	282, 878, 980
AflIII	ACRYGT	2 cut(s)	432, 565
AgsI	TTSAA	2 cut(s)	446, 847
AjnI	CCWGG	6 cut(s)	11, 115, 275, 420, 544, 898
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	5 cut(s)	47, 71, 86, 185, 471
AluI	AGCT	5 cut(s)	47, 71, 86, 185, 471
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	59, 536
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	3 cut(s)	621, 787, 810
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	71, 272, 552
ApoI	RAATTY	2 cut(s)	365, 765
AseI	ATTAAT	2 cut(s)	485, 966
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	79, 932
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	3 cut(s)	74, 719, 761
AvaII	GGWCC	1 cut(s)	896
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	886
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	58, 284, 564
BccI	CCATC	4 cut(s)	206, 236, 293, 799
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	603, 637
BciT130I	CCWGG	6 cut(s)	13, 117, 277, 422, 546, 900
BciVI	GTATCC	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	59, 536
BfaI	CTAG	3 cut(s)	593, 887, 1021
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	734
BisI	GCNGC	4 cut(s)	72, 75, 273, 553
BlsI	GCNGC	4 cut(s)	73, 76, 274, 554
Bme1390I	CCNGG	6 cut(s)	13, 117, 277, 422, 546, 900
Bme18I	GGWCC	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	896
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	6 cut(s)	13, 117, 277, 422, 546, 900
BmrI	ACTGGG	1 cut(s)	1005
BmuI	ACTGGG	1 cut(s)	1005
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	2 cut(s)	507, 921
Bpu10I	CCTNAGC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	4 cut(s)	27, 115, 411, 775
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 878, 980
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	1011
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	6 cut(s)	13, 117, 277, 422, 546, 900
BseDI	CCNNGG	4 cut(s)	27, 115, 411, 775
BseGI	GGATG	4 cut(s)	304, 500, 805, 928
BseLI	CCNNNNNNNGG	3 cut(s)	282, 878, 980
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	3 cut(s)	272, 308, 849
BseNI	ACTGG	1 cut(s)	1011
BseRI	GAGGAG	2 cut(s)	195, 298
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	58, 284, 564
BsgI	GTGCAG	2 cut(s)	291, 366
Bsh1236I	CGCG	2 cut(s)	625, 930
BshFI	GGCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	491, 528
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	282, 878, 980
BsmAI	GTCTC	2 cut(s)	59, 536
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	482, 886
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	626, 779, 802, 925
Bsp68I	TCGCGA	1 cut(s)	625
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	3 cut(s)	273, 307, 848
BspFNI	CGCG	2 cut(s)	625, 930
BspLI	GGNNCC	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	3 cut(s)	621, 787, 810
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	527
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	27, 115, 411, 775
BssMI	GATC	4 cut(s)	626, 779, 802, 925
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	6 cut(s)	13, 117, 277, 422, 546, 900
Bst4CI	ACNGT	4 cut(s)	19, 191, 638, 776
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	387, 391, 823
BstDEI	CTNAG	3 cut(s)	281, 294, 835
BstDSI	CCRYGG	2 cut(s)	27, 775
BstEII	GGTNACC	2 cut(s)	245, 305
BstENI	CCTNNNNNAGG	1 cut(s)	280
BstF5I	GGATG	4 cut(s)	304, 500, 805, 928
BstFNI	CGCG	2 cut(s)	625, 930
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 932
BstKTI	GATC	4 cut(s)	629, 782, 805, 928
BstMAI	GTCTC	2 cut(s)	59, 536
BstMBI	GATC	4 cut(s)	626, 779, 802, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 477, 831
BstNI	CCWGG	6 cut(s)	13, 117, 277, 422, 546, 900
BstNSI	RCATGY	3 cut(s)	389, 436, 569
BstPI	GGTNACC	2 cut(s)	245, 305
BstSCI	CCNGG	6 cut(s)	11, 115, 275, 420, 544, 898
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	2 cut(s)	625, 930
BstV1I	GCAGC	3 cut(s)	58, 284, 564
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	2 cut(s)	27, 775
BtsCI	GGATG	4 cut(s)	304, 500, 805, 928
BtsIMutI	CAGTG	2 cut(s)	196, 843
BtuMI	TCGCGA	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	387, 391, 823
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	2 cut(s)	79, 932
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	896
Csp6I	GTAC	3 cut(s)	436, 517, 841
CviAII	CATG	6 cut(s)	148, 386, 433, 475, 566, 733
CviQI	GTAC	3 cut(s)	436, 517, 841
DdeI	CTNAG	3 cut(s)	281, 294, 835
DpnI	GATC	4 cut(s)	628, 781, 804, 927
DpnII	GATC	4 cut(s)	626, 779, 802, 925
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	886
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	896
Eco91I	GGTNACC	2 cut(s)	245, 305
EcoNI	CCTNNNNNAGG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	896
EcoO65I	GGTNACC	2 cut(s)	245, 305
EcoRI	GAATTC	1 cut(s)	765
EcoRII	CCWGG	6 cut(s)	11, 115, 275, 420, 544, 898
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	6 cut(s)	151, 389, 436, 478, 569, 736
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	6 cut(s)	147, 385, 432, 474, 565, 732
Fnu4HI	GCNGC	4 cut(s)	72, 75, 273, 553
FokI	GGATG	4 cut(s)	311, 487, 792, 935
FriOI	GRGCYC	1 cut(s)	886
Fsp4HI	GCNGC	4 cut(s)	72, 75, 273, 553
FspBI	CTAG	3 cut(s)	593, 887, 1021
GlaI	GCGC	2 cut(s)	78, 931
GluI	GCNGC	4 cut(s)	72, 75, 273, 553
GsuI	CTGGAG	2 cut(s)	507, 921
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	491, 528
HhaI	GCGC	2 cut(s)	79, 932
Hin1II	CATG	6 cut(s)	151, 389, 436, 478, 569, 736
Hin6I	GCGC	2 cut(s)	77, 930
HinP1I	GCGC	2 cut(s)	77, 930
HinfI	GANTC	5 cut(s)	32, 40, 288, 446, 494
HpaII	CCGG	2 cut(s)	491, 528
HphI	GGTGA	3 cut(s)	74, 719, 761
Hpy166II	GTNNAC	5 cut(s)	31, 480, 519, 598, 841
Hpy188I	TCNGA	5 cut(s)	52, 104, 112, 740, 949
Hpy188III	TCNNGA	2 cut(s)	296, 624
Hpy8I	GTNNAC	5 cut(s)	31, 480, 519, 598, 841
HpyAV	CCTTC	3 cut(s)	145, 419, 824
HpyCH4III	ACNGT	4 cut(s)	19, 191, 638, 776
HpyCH4V	TGCA	7 cut(s)	272, 347, 480, 562, 614, 825, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 477, 831
HpyF3I	CTNAG	3 cut(s)	281, 294, 835
Hsp92II	CATG	6 cut(s)	151, 389, 436, 478, 569, 736
HspAI	GCGC	2 cut(s)	77, 930
Kzo9I	GATC	4 cut(s)	626, 779, 802, 925
LmnI	GCTCC	2 cut(s)	182, 881
Lsp1109I	GCAGC	3 cut(s)	58, 284, 564
MaeI	CTAG	3 cut(s)	593, 887, 1021
MaeIII	GTNAC	5 cut(s)	119, 245, 289, 305, 568
MalI	GATC	4 cut(s)	628, 781, 804, 927
MboI	GATC	4 cut(s)	626, 779, 802, 925
MboII	GAAGA	3 cut(s)	148, 774, 917
MflI	RGATCY	1 cut(s)	779
MhlI	GDGCHC	2 cut(s)	482, 886
MluCI	AATT	5 cut(s)	257, 365, 604, 765, 847
MlyI	GAGTC	3 cut(s)	26, 297, 503
MmeI	TCCRAC	2 cut(s)	683, 718
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	485, 966
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	491, 528
MspR9I	CCNGG	6 cut(s)	13, 117, 277, 422, 546, 900
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	6 cut(s)	13, 117, 277, 422, 546, 900
MvnI	CGCG	2 cut(s)	625, 930
MwoI	GCNNNNNNNGC	3 cut(s)	83, 477, 831
NdeII	GATC	4 cut(s)	626, 779, 802, 925
NlaIII	CATG	6 cut(s)	151, 389, 436, 478, 569, 736
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	289
NruI	TCGCGA	1 cut(s)	625
NspI	RCATGY	3 cut(s)	389, 436, 569
OliI	CACNNNNGTG	1 cut(s)	774
PaeI	GCATGC	1 cut(s)	389
PciI	ACATGT	2 cut(s)	432, 565
PcsI	WCGNNNNNNNCGW	2 cut(s)	622, 744
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	40, 446
PflMI	CCANNNNNTGG	1 cut(s)	980
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	4 cut(s)	73, 76, 274, 554
PleI	GAGTC	3 cut(s)	26, 296, 502
PpsI	GAGTC	3 cut(s)	26, 296, 502
PpuMI	RGGWCCY	1 cut(s)	896
PscI	ACATGT	2 cut(s)	432, 565
PshBI	ATTAAT	2 cut(s)	485, 966
Psp5II	RGGWCCY	1 cut(s)	896
Psp6I	CCWGG	6 cut(s)	11, 115, 275, 420, 544, 898
PspEI	GGTNACC	2 cut(s)	245, 305
PspGI	CCWGG	6 cut(s)	11, 115, 275, 420, 544, 898
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	1 cut(s)	896
PspPPI	RGGWCCY	1 cut(s)	896
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	71
RruI	TCGCGA	1 cut(s)	625
RsaI	GTAC	3 cut(s)	437, 518, 842
RsaNI	GTAC	3 cut(s)	436, 517, 841
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	485, 966
SatI	GCNGC	4 cut(s)	72, 75, 273, 553
Sau3AI	GATC	4 cut(s)	626, 779, 802, 925
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	3 cut(s)	26, 297, 503
ScrFI	CCNGG	6 cut(s)	13, 117, 277, 422, 546, 900
SduI	GDGCHC	2 cut(s)	482, 886
SinI	GGWCC	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	774
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	257, 365, 604, 765, 847
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	593, 887, 1021
StyD4I	CCNGG	6 cut(s)	11, 115, 275, 420, 544, 898
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	4 cut(s)	19, 191, 638, 776
TaqI	TCGA	3 cut(s)	159, 240, 513
TasI	AATT	5 cut(s)	257, 365, 604, 765, 847
TatI	WGTACW	3 cut(s)	435, 516, 840
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	40, 446
Tru1I	TTAA	2 cut(s)	485, 966
Tru9I	TTAA	2 cut(s)	485, 966
TscAI	CASTG	2 cut(s)	196, 843
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	71, 272, 552
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	164, 463, 570
TspRI	CASTG	2 cut(s)	196, 843
Van91I	CCANNNNNTGG	1 cut(s)	980
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	896
VspI	ATTAAT	2 cut(s)	485, 966
XagI	CCTNNNNNAGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	365, 765
XceI	RCATGY	3 cut(s)	389, 436, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	3 cut(s)	593, 887, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.