Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Forward (+)

5363582 .. 5364223

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAATATGCAGCGAAGGGAGTTCTCAACTTTGAAGGAGGTTTATGGGAATAATGAGTCCCTACCATGGAAAACTAGATTGAGTATTGCAAAGCAGATTGCAAATGCAGTTACATATCTACATACTGCATTTCCCAGGCCCATTATTCTCAGGGATTTAAAACCCAACTGCTTTTTTTTAGACAATAACTATGTTCCCAAAATCTGCACCTTCGCAGTTTCCATAACCATTCCACCTATGCAATCACATGTTTATACTGATTATTTGATATATACACCTGGGTATCTTGACCCTACCTACTCGGCTAATCACCGCATTTCAGAAAAAACTGATGTGTATACTTTTGGTATTGTATTACTTGTATTTATAACAGGACAACAAGCCGTGGTAAGAAATCAGGCAGGAGAATATGAGCACATAATTCCATATGTGAAATCACATGCTTCTGGTGGCCAAGTTCAAACCATTATGGATCCTAAAATATCTATGGAGGTAGGGGGAGCTGAGTCAGCACACCAGCAATTGCATGATTTCCTAGCACTGGCATTGTTATGCACTCAATATAAAAGTGAAGAAAGGCCAGATATGATCGATGTGGCCAAAGAACTTGTACGAATTGAGAATTTTATCTCAAGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

213

Amino Acids

24.18

Weight (kDa)

6.37

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 180	6.1e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 203	1.5e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	2 cut(s)	467, 480
AcoI	YGGCCR	2 cut(s)	451, 597
AcsI	RAATTY	1 cut(s)	622
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	2 cut(s)	66, 541
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	34, 461
AjnI	CCWGG	2 cut(s)	134, 277
AluBI	AGCT	1 cut(s)	503
AluI	AGCT	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	467, 480
AoxI	GGCC	4 cut(s)	137, 451, 578, 597
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BalI	TGGCCA	2 cut(s)	453, 599
BamHI	GGATCC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	136, 279
BfaI	CTAG	3 cut(s)	75, 536, 640
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	136, 279
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	136, 279
BpuEI	CTTGAG	1 cut(s)	616
Bsa29I	ATCGAT	1 cut(s)	591
BsaJI	CCNNGG	4 cut(s)	65, 134, 278, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 541
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	136, 279
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	4 cut(s)	65, 134, 278, 384
BseLI	CCNNNNNNNGG	2 cut(s)	66, 541
BseMII	CTCAG	2 cut(s)	163, 495
BseNI	ACTGG	1 cut(s)	546
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	139, 453, 580, 599
BshVI	ATCGAT	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	66, 541
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	4 cut(s)	139, 453, 580, 599
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	472, 588
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	4 cut(s)	139, 453, 580, 599
BspCNI	CTCAG	2 cut(s)	162, 496
BspDI	ATCGAT	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	467, 480
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	4 cut(s)	65, 134, 278, 384
BssMI	GATC	2 cut(s)	472, 588
BssNAI	GTATAC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	65
Bst1107I	GTATAC	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	136, 279
BstDEI	CTNAG	2 cut(s)	149, 504
BstDSI	CCRYGG	2 cut(s)	65, 384
BstKTI	GATC	2 cut(s)	475, 591
BstMBI	GATC	2 cut(s)	472, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	136, 279
BstNSI	RCATGY	2 cut(s)	251, 443
BstSCI	CCNGG	2 cut(s)	134, 277
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BstZ17I	GTATAC	1 cut(s)	339
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	139, 453, 580, 599
BsuTUI	ATCGAT	1 cut(s)	591
BtgI	CCRYGG	2 cut(s)	65, 384
BtsIMutI	CAGTG	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	4 cut(s)	66, 248, 440, 527
CviJI	RGCY	8 cut(s)	139, 305, 383, 453, 503, 580, 599, 639
CviKI_1	RGCY	8 cut(s)	139, 305, 383, 453, 503, 580, 599, 639
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	2 cut(s)	149, 504
DpnI	GATC	2 cut(s)	474, 590
DpnII	GATC	2 cut(s)	472, 588
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	451, 597
Eco130I	CCWWGG	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	134, 277
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	69, 251, 443, 530
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	4 cut(s)	65, 247, 439, 526
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	3 cut(s)	75, 536, 640
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	139, 453, 580, 599
Hin1II	CATG	4 cut(s)	69, 251, 443, 530
HinfI	GANTC	2 cut(s)	56, 506
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	3 cut(s)	9, 28, 220
HpyCH4V	TGCA	9 cut(s)	10, 89, 101, 107, 128, 207, 241, 526, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	149, 504
Hsp92II	CATG	4 cut(s)	69, 251, 443, 530
Kzo9I	GATC	2 cut(s)	472, 588
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	3 cut(s)	75, 536, 640
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	474, 590
MboI	GATC	2 cut(s)	472, 588
MboII	GAAGA	1 cut(s)	584
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	417
MlsI	TGGCCA	2 cut(s)	453, 599
MluCI	AATT	4 cut(s)	420, 521, 615, 622
MluNI	TGGCCA	2 cut(s)	453, 599
MlyI	GAGTC	2 cut(s)	65, 515
MnlI	CCTC	2 cut(s)	31, 484
Mox20I	TGGCCA	2 cut(s)	453, 599
MscI	TGGCCA	2 cut(s)	453, 599
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	550
Msp20I	TGGCCA	2 cut(s)	453, 599
MspR9I	CCNGG	2 cut(s)	136, 279
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	136, 279
MwoI	GCNNNNNNNGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	2 cut(s)	472, 588
NlaIII	CATG	4 cut(s)	69, 251, 443, 530
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	1 cut(s)	281
NspI	RCATGY	2 cut(s)	251, 443
PciI	ACATGT	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	64, 514
PpsI	GAGTC	2 cut(s)	64, 514
PscI	ACATGT	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	134, 277
PspGI	CCWGG	2 cut(s)	134, 277
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	550
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	472, 588
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	2 cut(s)	65, 515
ScrFI	CCNGG	2 cut(s)	136, 279
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	7 cut(s)	42, 212, 238, 280, 299, 495, 505
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	4 cut(s)	420, 521, 615, 622
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	3 cut(s)	75, 536, 640
StyD4I	CCNGG	2 cut(s)	134, 277
StyI	CCWWGG	1 cut(s)	65
TaqI	TCGA	1 cut(s)	591
TasI	AATT	4 cut(s)	420, 521, 615, 622
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	2 cut(s)	251, 443
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	3 cut(s)	75, 536, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.