Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004434

Physical Location & Seq

Genomic Coordinates Reverse (-)

25741380 .. 25741928

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTGCACATTAATACCGGAGTCATCATCCTCCCACATCGAGTACACTCCAGCCGGTCTCATCTACAAGCCAGGAGGCAGCAATCTGCAACATGTAACTTCCATTTCATTCCTACTTCTAGTTTACGCCAATTACCTTGCACGAACCTCGCGATCCCTCAACTGTGGAAACATAGATGTCAGTCCAACAACGCTTCGCCAAATCGCCAAAAAGCAGGTTGATTACATTTTGGGTGATAATCCAATGGGTTTGTCATACATGGTCGGATACAGTGACCATTATCCGCAGCGAATTCACCACCGTGGATCTTCTTTACCATCTATCAAGAATCATCCCCAACCCATTGCTTGCAAGGAAGGCTCAGTGTACTTCAATTCGTCAAACCCTAACCCTAATCCCCTTGTGGGAACCCTAATAGGAGGACCTGGAGAAGATGATGTGTATGAGGATGATCGCGTTGATTTTAGGAAGTCCGAACCGACCACATACATTAATGCACCATTTGTTGGTGTTTTGGCATACTTTGTGGCTAATCCCAGTCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

182

Amino Acids

19.95

Weight (kDa)

6.27

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	2 - 172	2.5e-47	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39010 AT4G39010
fragaria_vesca	FvH4_2g10330
malus_domestica	MD10G1063800.v1.1 MD10G1186600.v1.1
prunus_persica	Prupe.1G331000_v2.0.a1 Prupe.8G085400_v2.0.a1
pyrus_communis	pycom10g04930
rosa_chinensis	RchiOBHm_Chr6g0267611 RchiOBHm_Chr6g0267661 RchiOBHm_Chr6g0267791 RchiOBHm_Chr6g0267801
rosa_laevigata	RLG00000013979 RLG00000013983
rosa_multiflora	Rmu_sc0001833.1_g000001 Rmu_sc0005400.1_g000030
rosa_roxburghii	Rroxscaffold_7G00200500 Rroxscaffold_7G00200540
rosa_rugosa	Rorug06G0033900 Rorug06G0041700.1 Rorug06G0041800
rosa_samantha	Rh6AG155700 Rh6AG155900 Rh6AG156000 Rh6BG156900 Rh6BG157000 Rh6CG152500
rosa_wichuraiana	Rw6G013370 Rw6G013400 Rw6G013520 Rw6G013530 Rw6G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccII	CGCG	2 cut(s)	151, 456
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	147, 313
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	2 cut(s)	44, 368
AfiI	CCNNNNNNNGG	2 cut(s)	404, 506
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	70, 424
AleI	CACNNNNGTG	1 cut(s)	300
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	62
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	147, 313
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	78, 286
ApoI	RAATTY	1 cut(s)	291
AseI	ATTAAT	2 cut(s)	11, 492
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	245, 287
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	90, 298
BccI	CCATC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	2 cut(s)	72, 426
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	119, 547
BfuAI	ACCTGC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	79, 287
BlsI	GCNGC	2 cut(s)	80, 288
Bme1390I	CCNGG	2 cut(s)	72, 426
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	72, 426
BmrI	ACTGGG	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	531
BpmI	CTGGAG	2 cut(s)	33, 447
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 506
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	72, 426
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	26, 331, 454
BseLI	CCNNNNNNNGG	2 cut(s)	404, 506
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	90, 298
Bsh1236I	CGCG	2 cut(s)	151, 456
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	17, 54
BslI	CCNNNNNNNGG	2 cut(s)	404, 506
BsmAI	GTCTC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	152, 305, 451
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	374
BspFNI	CGCG	2 cut(s)	151, 456
BspLI	GGNNCC	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	147, 313
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	152, 305, 451
Bst2UI	CCWGG	2 cut(s)	72, 426
Bst4CI	ACNGT	3 cut(s)	164, 272, 302
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	3 cut(s)	26, 331, 454
BstFNI	CGCG	2 cut(s)	151, 456
BstKTI	GATC	3 cut(s)	155, 308, 454
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	152, 305, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	2 cut(s)	72, 426
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	70, 424
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	2 cut(s)	151, 456
BstV1I	GCAGC	2 cut(s)	90, 298
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	26, 331, 454
BtsIMutI	CAGTG	2 cut(s)	277, 369
BtuMI	TCGCGA	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	43, 367
CviAII	CATG	2 cut(s)	92, 259
CviJI	RGCY	4 cut(s)	53, 70, 360, 530
CviKI_1	RGCY	4 cut(s)	53, 70, 360, 530
CviQI	GTAC	2 cut(s)	43, 367
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	3 cut(s)	154, 307, 453
DpnII	GATC	3 cut(s)	152, 305, 451
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	70, 424
FaeI	CATG	2 cut(s)	95, 262
FaiI	YATR	7 cut(s)	93, 173, 256, 260, 444, 487, 520
FatI	CATG	2 cut(s)	91, 258
Fnu4HI	GCNGC	2 cut(s)	79, 287
FokI	GGATG	3 cut(s)	13, 318, 461
Fsp4HI	GCNGC	2 cut(s)	79, 287
FspBI	CTAG	2 cut(s)	119, 547
GluI	GCNGC	2 cut(s)	79, 287
GsuI	CTGGAG	2 cut(s)	33, 447
HapII	CCGG	2 cut(s)	17, 54
Hin1II	CATG	2 cut(s)	95, 262
HinfI	GANTC	2 cut(s)	20, 328
HpaII	CCGG	2 cut(s)	17, 54
HphI	GGTGA	2 cut(s)	245, 287
Hpy166II	GTNNAC	4 cut(s)	6, 45, 124, 367
Hpy188I	TCNGA	2 cut(s)	266, 475
Hpy188III	TCNNGA	2 cut(s)	150, 325
Hpy8I	GTNNAC	4 cut(s)	6, 45, 124, 367
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	164, 272, 302
HpyCH4V	TGCA	5 cut(s)	6, 88, 140, 351, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	95, 262
Kzo9I	GATC	3 cut(s)	152, 305, 451
LpnPI	CCDG	8 cut(s)	30, 57, 63, 67, 84, 200, 411, 438
Lsp1109I	GCAGC	2 cut(s)	90, 298
MaeI	CTAG	2 cut(s)	119, 547
MaeIII	GTNAC	2 cut(s)	94, 272
MalI	GATC	3 cut(s)	154, 307, 453
MboI	GATC	3 cut(s)	152, 305, 451
MboII	GAAGA	2 cut(s)	300, 443
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	130, 291, 373
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	209, 244
MnlI	CCTC	6 cut(s)	40, 68, 157, 167, 413, 439
MseI	TTAA	2 cut(s)	11, 492
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	2 cut(s)	17, 54
MspR9I	CCNGG	2 cut(s)	72, 426
MvaI	CCWGG	2 cut(s)	72, 426
MvnI	CGCG	2 cut(s)	151, 456
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	3 cut(s)	152, 305, 451
NlaIII	CATG	2 cut(s)	95, 262
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	272
NruI	TCGCGA	1 cut(s)	151
NspI	RCATGY	1 cut(s)	95
OliI	CACNNNNGTG	1 cut(s)	300
PciI	ACATGT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	2 cut(s)	80, 288
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	422
PscI	ACATGT	1 cut(s)	91
PshBI	ATTAAT	2 cut(s)	11, 492
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	70, 424
PspGI	CCWGG	2 cut(s)	70, 424
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	1 cut(s)	422
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	305
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	2 cut(s)	44, 368
RsaNI	GTAC	2 cut(s)	43, 367
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	11, 492
SatI	GCNGC	2 cut(s)	79, 287
Sau3AI	GATC	3 cut(s)	152, 305, 451
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	72, 426
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	4 cut(s)	138, 149, 219, 427
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	130, 291, 373
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	119, 547
StyD4I	CCNGG	2 cut(s)	70, 424
TaaI	ACNGT	3 cut(s)	164, 272, 302
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	130, 291, 373
TatI	WGTACW	2 cut(s)	42, 366
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	11, 492
Tru9I	TTAA	2 cut(s)	11, 492
TscAI	CASTG	2 cut(s)	277, 369
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	78, 286
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	2 cut(s)	277, 369
Van91I	CCANNNNNTGG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	422
VspI	ATTAAT	2 cut(s)	11, 492
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	2 cut(s)	119, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.