Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003188

Physical Location & Seq

Genomic Coordinates Forward (+)

64800227 .. 64802838

Gene Structure 2612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015344

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGATGATGTTCGTCATCTCCTTGGTGATGGCATTCACAGAAGCCAAGTGGGCCGAGTCAGTAGAGGCCAAAAAGGAAGCGACGCCGTCGGAGACAGTAACCAACCTCCAGTTCTTCTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCCTCCGACACCAATAAGTCTCTGACACTTTTCGGGGCTTTACTCATGGCCGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTGGGTCGGGCACAAGGGCTATACGGGTCATCCGGCCAGCAAGAGCTTGGCCTGATTATGGCTATGAGCTTTGCGTTCAATGATGGTTATTACAGTGGTAGTTCCATTAGTATATTTGGTAAAAACCCGGCACTGAACCCAGTTCGAGAGTTGCCGGTTGTGGGTGGAACTGGGGTGTTCCGGCTGGCTCGTGGATATGCAATTGCCCATACTCATTGGTTTGATCTTAGTGGTGATGCAATTGTAGGATACAATGTCACTTCGAAAGCTAGAGAAATCAATCAGATCCAAATGGCAAACACAACTCTACATCTGGTGCTGATGGTGTACATCTCCATGGTGGTGTCCTTCACGGAAGCGAAGTGGGCAGAGTCCGTGGTTGCAACAAAGGAAGCGACGCCATCGGAGACAGTAACCAACCTCCAGTTCTACTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCTTCCGACACCGAAAAGTCTCCGACACTTTTCGGGGCTTTACTCATGGCTGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTAGGCCGGGCACAAGGGCTATACGGGTCATCCTGCCAGCAGGAACTTGGCCTGATTATGGCCATGAGCTTTGCGTTCTCGGACGGTACGTACAATGGGAGCTCCATTAGTATTTTTGGAAAGAACCCGGTCACGAACCCAATTCGGGAGTTGCCGGTTGTGGGTGGAACTGGGGTTTTCCGGTTGGCTCGTGGTTATGCAATTGCCCATACGCATTGGGTAAATGCCACAGCTGGCGATGCAGTTGTTGGATACAATGTCACTGTAGTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

371

Amino Acids

39.65

Weight (kDa)

5.62

Isoelectric Point (pI)

21.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	33 - 174	3.3e-52	Dirigent-like protein
Dirigent	PF03018	225 - 368	8.2e-56	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21100 AT2G21100
fragaria_vesca	FvH4_2g01681 FvH4_2g01690
malus_domestica	MD05G1117300.v1.1 MD05G1117500.v1.1
prunus_persica	Prupe.8G162100_v2.0.a1
pyrus_communis	pycom05g11150
rosa_chinensis	RchiOBHm_Chr6g0244561 RchiOBHm_Chr6g0244571 RchiOBHm_Chr6g0244581
rosa_laevigata	RLG00000015343 RLG00000015344
rosa_multiflora	Rmu_sc0002522.1_g000008 Rmu_sc0003679.1_g000002 Rmu_sc0006635.1_g000005 Rmu_sc0011292.1_g000012
rosa_roxburghii	Rroxscaffold_7G00215710
rosa_rugosa	Rorug05G0509400 Rorug05G0509500 Rorug05G0509600
rosa_samantha	Rh6AG019400 Rh6AG025200 Rh6AG025300 Rh6AG025400 Rh6BG020000 Rh6BG020100 Rh6CG018300 Rh6CG018400 Rh6CG018500 Rh6DG019400 Rh6DG019500 Rh6DG019600
rosa_wichuraiana	Rw6G000040 Rw6G002050 Rw6G002060 Rw6G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	229, 805
AciI	CCGC	2 cut(s)	227, 803
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	3 cut(s)	216, 295, 897
AcyI	GRCGYC	2 cut(s)	83, 659
AfaI	GTAC	5 cut(s)	156, 590, 732, 925, 929
AfiI	CCNNNNNNNGG	5 cut(s)	319, 422, 895, 982, 998
AflIII	ACRYGT	2 cut(s)	157, 733
AgsI	TTSAA	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 127, 671, 703
AluBI	AGCT	9 cut(s)	259, 307, 330, 530, 746, 835, 906, 939, 1070
AluI	AGCT	9 cut(s)	259, 307, 330, 530, 746, 835, 906, 939, 1070
Alw21I	GWGCWC	1 cut(s)	941
Alw26I	GTCTC	6 cut(s)	86, 192, 230, 662, 768, 806
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	8 cut(s)	51, 66, 216, 295, 310, 841, 886, 897
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	3 cut(s)	389, 845, 965
AsuHPI	GGTGA	4 cut(s)	37, 223, 506, 799
AsuII	TTCGAA	1 cut(s)	524
BaeGI	GKGCMC	2 cut(s)	274, 850
BalI	TGGCCA	1 cut(s)	899
BanII	GRGCYC	1 cut(s)	941
BauI	CACGAG	3 cut(s)	260, 450, 1026
Bbv12I	GWGCWC	1 cut(s)	941
BccI	CCATC	4 cut(s)	22, 338, 577, 670
BceAI	ACGGC	3 cut(s)	70, 137, 713
BciVI	GTATCC	2 cut(s)	503, 1082
BcnI	CCSGG	3 cut(s)	389, 845, 965
BcoDI	GTCTC	6 cut(s)	86, 192, 230, 662, 768, 806
BfaI	CTAG	4 cut(s)	147, 531, 723, 1111
BfmI	CTRYAG	1 cut(s)	1101
BfuI	GTATCC	2 cut(s)	503, 1082
BglI	GCCNNNNNGGC	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	389, 845, 965
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	389, 845, 965
BmrI	ACTGGG	3 cut(s)	395, 441, 1017
BmsI	GCATC	2 cut(s)	487, 1066
BmuI	ACTGGG	3 cut(s)	395, 441, 1017
BpmI	CTGGAG	2 cut(s)	92, 668
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	150, 726
BpuMI	CCSGG	3 cut(s)	389, 845, 965
BsaAI	YACGTR	3 cut(s)	158, 734, 927
BsaHI	GRCGYC	2 cut(s)	83, 659
BsaJI	CCNNGG	3 cut(s)	21, 597, 636
BsaWI	WCCGGW	1 cut(s)	1017
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 799, 829
Bsc4I	CCNNNNNNNGG	5 cut(s)	319, 422, 895, 982, 998
Bse118I	RCCGGY	2 cut(s)	415, 991
Bse1I	ACTGG	5 cut(s)	109, 401, 436, 685, 1012
BseDI	CCNNGG	3 cut(s)	21, 597, 636
BseGI	GGATG	2 cut(s)	290, 866
BseLI	CCNNNNNNNGG	5 cut(s)	319, 422, 895, 982, 998
BseNI	ACTGG	5 cut(s)	109, 401, 436, 685, 1012
BseSI	GKGCMC	2 cut(s)	274, 850
BshFI	GGCC	8 cut(s)	53, 68, 218, 297, 312, 843, 888, 899
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	8 cut(s)	294, 389, 416, 442, 844, 965, 992, 1018
BsiWI	CGTACG	2 cut(s)	154, 730
BslI	CCNNNNNNNGG	5 cut(s)	319, 422, 895, 982, 998
BsmAI	GTCTC	6 cut(s)	86, 192, 230, 662, 768, 806
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	8 cut(s)	53, 68, 218, 297, 312, 843, 888, 899
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	3 cut(s)	274, 850, 941
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	2 cut(s)	484, 546
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	227, 803
BspANI	GGCC	8 cut(s)	53, 68, 218, 297, 312, 843, 888, 899
BspPI	GGATC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	524
BsrBI	CCGCTC	2 cut(s)	229, 805
BsrFI	RCCGGY	2 cut(s)	415, 991
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	5 cut(s)	109, 401, 436, 685, 1012
BssAI	RCCGGY	2 cut(s)	415, 991
BssECI	CCNNGG	3 cut(s)	21, 597, 636
BssMI	GATC	2 cut(s)	484, 546
BssNI	GRCGYC	2 cut(s)	83, 659
BssSI	CACGAG	3 cut(s)	260, 450, 1026
BssT1I	CCWWGG	2 cut(s)	21, 597
Bst2BI	CACGAG	3 cut(s)	260, 450, 1026
Bst4CI	ACNGT	7 cut(s)	97, 130, 356, 673, 706, 923, 1102
BstACI	GRCGYC	2 cut(s)	83, 659
BstAUI	TGTACA	1 cut(s)	588
BstBAI	YACGTR	3 cut(s)	158, 734, 927
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	299, 447, 875, 1072
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	2 cut(s)	597, 636
BstF5I	GGATG	2 cut(s)	290, 866
BstKTI	GATC	2 cut(s)	487, 549
BstMAI	GTCTC	6 cut(s)	86, 192, 230, 662, 768, 806
BstMBI	GATC	2 cut(s)	484, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 626, 1076
BstSCI	CCNGG	3 cut(s)	387, 843, 963
BstSFI	CTRYAG	1 cut(s)	1101
BstSLI	GKGCMC	2 cut(s)	274, 850
BstSNI	TACGTA	1 cut(s)	927
BstX2I	RGATCY	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	546
BsuI	GTATCC	2 cut(s)	503, 1082
BsuRI	GGCC	8 cut(s)	53, 68, 218, 297, 312, 843, 888, 899
BtgI	CCRYGG	2 cut(s)	597, 636
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	2 cut(s)	290, 866
BtsIMutI	CAGTG	5 cut(s)	139, 361, 392, 715, 1098
Cac8I	GCNNGC	4 cut(s)	299, 447, 875, 1072
Cfr10I	RCCGGY	2 cut(s)	415, 991
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	2 cut(s)	91, 667
Csp6I	GTAC	5 cut(s)	155, 589, 731, 924, 928
CviAII	CATG	4 cut(s)	214, 598, 790, 901
CviQI	GTAC	5 cut(s)	155, 589, 731, 924, 928
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	486, 548
DpnII	GATC	2 cut(s)	484, 546
EaeI	YGGCCR	3 cut(s)	216, 295, 897
Ecl136II	GAGCTC	1 cut(s)	939
Eco105I	TACGTA	1 cut(s)	927
Eco130I	CCWWGG	2 cut(s)	21, 597
Eco24I	GRGCYC	1 cut(s)	941
Eco53kI	GAGCTC	1 cut(s)	939
EcoICRI	GAGCTC	1 cut(s)	939
EcoT14I	CCWWGG	2 cut(s)	21, 597
EcoT38I	GRGCYC	1 cut(s)	941
ErhI	CCWWGG	2 cut(s)	21, 597
FaeI	CATG	4 cut(s)	217, 601, 793, 904
FatI	CATG	4 cut(s)	213, 597, 789, 900
FauI	CCCGC	2 cut(s)	234, 810
FokI	GGATG	2 cut(s)	277, 853
FriOI	GRGCYC	1 cut(s)	941
FspBI	CTAG	4 cut(s)	147, 531, 723, 1111
GsuI	CTGGAG	2 cut(s)	92, 668
HaeIII	GGCC	8 cut(s)	53, 68, 218, 297, 312, 843, 888, 899
HapII	CCGG	8 cut(s)	294, 389, 416, 442, 844, 965, 992, 1018
HgaI	GACGC	2 cut(s)	91, 667
Hin1I	GRCGYC	2 cut(s)	83, 659
Hin1II	CATG	4 cut(s)	217, 601, 793, 904
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	4 cut(s)	56, 238, 632, 814
HpaII	CCGG	8 cut(s)	294, 389, 416, 442, 844, 965, 992, 1018
HphI	GGTGA	4 cut(s)	37, 223, 506, 799
Hpy166II	GTNNAC	2 cut(s)	589, 1108
Hpy188I	TCNGA	8 cut(s)	91, 175, 192, 546, 667, 751, 768, 919
Hpy188III	TCNNGA	5 cut(s)	242, 407, 818, 970, 983
Hpy8I	GTNNAC	2 cut(s)	589, 1108
Hpy99I	CGWCG	3 cut(s)	85, 91, 661
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	7 cut(s)	97, 130, 356, 673, 706, 923, 1102
HpyCH4IV	ACGT	3 cut(s)	157, 733, 926
HpyCH4V	TGCA	5 cut(s)	461, 500, 644, 1037, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 626, 1076
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	3 cut(s)	157, 733, 926
Hsp92I	GRCGYC	2 cut(s)	83, 659
Hsp92II	CATG	4 cut(s)	217, 601, 793, 904
Kzo9I	GATC	2 cut(s)	484, 546
LmnI	GCTCC	2 cut(s)	936, 944
LweI	GCATC	2 cut(s)	487, 1066
MaeI	CTAG	4 cut(s)	147, 531, 723, 1111
MaeII	ACGT	3 cut(s)	157, 733, 926
MaeIII	GTNAC	5 cut(s)	97, 517, 673, 967, 1096
MalI	GATC	2 cut(s)	486, 548
MbiI	CCGCTC	2 cut(s)	229, 805
MboI	GATC	2 cut(s)	484, 546
MboII	GAAGA	4 cut(s)	106, 109, 151, 727
MfeI	CAATTG	3 cut(s)	462, 501, 1038
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	3 cut(s)	274, 850, 941
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	6 cut(s)	250, 462, 501, 826, 978, 1038
MluNI	TGGCCA	1 cut(s)	899
MlyI	GAGTC	4 cut(s)	65, 232, 641, 808
MmeI	TCCRAC	5 cut(s)	69, 198, 774, 791, 1066
MnlI	CCTC	4 cut(s)	58, 116, 181, 692
Mox20I	TGGCCA	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	899
MslI	CAYNNNNRTG	2 cut(s)	596, 602
Msp20I	TGGCCA	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	1070
MspI	CCGG	8 cut(s)	294, 389, 416, 442, 844, 965, 992, 1018
MspR9I	CCNGG	3 cut(s)	389, 845, 965
MunI	CAATTG	3 cut(s)	462, 501, 1038
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	50, 626, 1076
NciI	CCSGG	3 cut(s)	389, 845, 965
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	2 cut(s)	484, 546
NlaIII	CATG	4 cut(s)	217, 601, 793, 904
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	517, 967, 1096
NspV	TTCGAA	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	923
PctI	GAATGC	1 cut(s)	32
Pfl23II	CGTACG	2 cut(s)	154, 730
PflFI	GACNNNGTC	3 cut(s)	85, 128, 704
PleI	GAGTC	4 cut(s)	64, 232, 640, 808
PpsI	GAGTC	4 cut(s)	64, 232, 640, 808
Ppu21I	YACGTR	3 cut(s)	158, 734, 927
Psp124BI	GAGCTC	1 cut(s)	941
PspLI	CGTACG	2 cut(s)	154, 730
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	546
PsyI	GACNNNGTC	3 cut(s)	85, 128, 704
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	5 cut(s)	156, 590, 732, 925, 929
RsaNI	GTAC	5 cut(s)	155, 589, 731, 924, 928
RseI	CAYNNNNRTG	2 cut(s)	596, 602
SacI	GAGCTC	1 cut(s)	941
Sau3AI	GATC	2 cut(s)	484, 546
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	4 cut(s)	65, 232, 641, 808
ScrFI	CCNGG	3 cut(s)	389, 845, 965
SduI	GDGCHC	3 cut(s)	274, 850, 941
SfaNI	GCATC	2 cut(s)	487, 1066
SfcI	CTRYAG	1 cut(s)	1101
SfuI	TTCGAA	1 cut(s)	524
SmiMI	CAYNNNNRTG	2 cut(s)	596, 602
SmlI	CTYRAG	2 cut(s)	165, 741
SmoI	CTYRAG	2 cut(s)	165, 741
SnaBI	TACGTA	1 cut(s)	927
Sse9I	AATT	6 cut(s)	250, 462, 501, 826, 978, 1038
SsiI	CCGC	2 cut(s)	227, 803
SspMI	CTAG	4 cut(s)	147, 531, 723, 1111
SstI	GAGCTC	1 cut(s)	941
StyD4I	CCNGG	3 cut(s)	387, 843, 963
StyI	CCWWGG	2 cut(s)	21, 597
TaaI	ACNGT	7 cut(s)	97, 130, 356, 673, 706, 923, 1102
TaiI	ACGT	3 cut(s)	160, 736, 929
TaqI	TCGA	2 cut(s)	406, 524
TasI	AATT	6 cut(s)	250, 462, 501, 826, 978, 1038
TatI	WGTACW	1 cut(s)	588
TscAI	CASTG	5 cut(s)	139, 361, 399, 715, 1105
TseFI	GTSAC	3 cut(s)	517, 967, 1096
Tsp45I	GTSAC	3 cut(s)	517, 967, 1096
TspGWI	ACGGA	2 cut(s)	625, 629
TspRI	CASTG	5 cut(s)	139, 361, 399, 715, 1105
Tth111I	GACNNNGTC	3 cut(s)	85, 128, 704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	305, 881
XspI	CTAG	4 cut(s)	147, 531, 723, 1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.