Rh6AG019400

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003188
Physical Location & Seq
Forward (+)
2134745 .. 2135287
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG019400.1

Sequence Viewer

Length: 543 bp
ATGGCAAACAACACAGTTGCGCCTCTGATGATGATGGTCGTCATCTCCTTGGTGATGGCATTCACAGAAGCCAAGTGGGCCGAGTCAGTAGAGGCCAAAAAGGAAGCGACGCCGTCGGAGACAGTAACCAACCTCCACTTCTTCTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCCTCCGACACCATTAAGTCTCTGACACTTTTCGGGGCTTTACTCATGACCGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTGGGTCGGGCTCAAGGGCTATACGGGTCATCCGGCCAACAGGAGCTTGGCCTGATTATGGCTATGAGCTTTGCGTTCACGGATGGTCCTTACAGTGGTATTTCCATTAGTATATTTGGTAAAATCCCGGCACTGAACCCAGTTCGAGAGTTGCCGGTTGTGGGTGGAACTGGGGTGTTCCGGCTGGCTCGTGGATTTGCAATTGCCCGTACTCATTGGTTTGATGACTTGATCTTAGTGGTGATGCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

180

Amino Acids

19.37

Weight (kDa)

5.55

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 42 - 172 2.7e-48 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 2 cut(s) 183, 499
AfiI CCNNNNNNNGG 3 cut(s) 346, 383, 449
AflIII ACRYGT 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 3 cut(s) 286, 334, 357
AluI AGCT 3 cut(s) 286, 334, 357
Alw26I GTCTC 3 cut(s) 113, 219, 257
AoxI GGCC 4 cut(s) 78, 93, 322, 337
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 78, 374
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 64, 250, 541
AvaII GGWCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 301
BauI CACGAG 2 cut(s) 287, 477
BccI CCATC 3 cut(s) 28, 49, 365
BceAI ACGGC 2 cut(s) 97, 164
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 113, 219, 257
BfaI CTAG 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 78, 374
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 2 cut(s) 422, 468
BmsI GCATC 1 cut(s) 522
BmuI ACTGGG 2 cut(s) 422, 468
BpuEI CTTGAG 2 cut(s) 177, 285
BpuMI CCSGG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 383, 449
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 428, 463
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 317, 376
BseLI CCNNNNNNNGG 3 cut(s) 346, 383, 449
BseNI ACTGG 2 cut(s) 428, 463
BshFI GGCC 4 cut(s) 80, 95, 324, 339
BsiSI CCGG 4 cut(s) 321, 416, 443, 469
BsiWI CGTACG 1 cut(s) 181
BslI CCNNNNNNNGG 3 cut(s) 346, 383, 449
BsmAI GTCTC 3 cut(s) 113, 219, 257
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 4 cut(s) 80, 95, 324, 339
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 519
BspACI CCGC 1 cut(s) 254
BspANI GGCC 4 cut(s) 80, 95, 324, 339
BspHI TCATGA 1 cut(s) 240
BsrBI CCGCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 428, 463
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 110
BssSI CACGAG 2 cut(s) 287, 477
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 2 cut(s) 287, 477
Bst4CI ACNGT 4 cut(s) 16, 124, 157, 383
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 317, 376
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 522
BstMAI GTCTC 3 cut(s) 113, 219, 257
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 4 cut(s) 80, 95, 324, 339
BtsCI GGATG 2 cut(s) 317, 376
BtsIMutI CAGTG 3 cut(s) 166, 388, 419
Cac8I GCNNGC 1 cut(s) 474
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 78, 374
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 182, 498
CviAII CATG 1 cut(s) 241
CviQI GTAC 2 cut(s) 182, 498
DdeI CTNAG 1 cut(s) 523
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 244
FaiI YATR 5 cut(s) 242, 310, 347, 353, 401
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 261
FokI GGATG 2 cut(s) 304, 383
FriOI GRGCYC 1 cut(s) 301
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 21
HaeIII GGCC 4 cut(s) 80, 95, 324, 339
HapII CCGG 4 cut(s) 321, 416, 443, 469
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 83, 265
HpaII CCGG 4 cut(s) 321, 416, 443, 469
HphI GGTGA 3 cut(s) 64, 250, 541
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 4 cut(s) 27, 118, 202, 219
Hpy188III TCNNGA 3 cut(s) 241, 269, 434
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 2 cut(s) 112, 118
HpyCH4III ACNGT 4 cut(s) 16, 124, 157, 383
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 488, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 9 cut(s) 314, 334, 353, 429, 441, 444, 456, 458, 482
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 521
MbiI CCGCTC 1 cut(s) 256
MboI GATC 1 cut(s) 519
MboII GAAGA 3 cut(s) 133, 136, 178
MfeI CAATTG 2 cut(s) 489, 536
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 3 cut(s) 277, 489, 536
MlyI GAGTC 2 cut(s) 92, 259
MmeI TCCRAC 2 cut(s) 96, 225
MnlI CCTC 4 cut(s) 33, 85, 143, 208
MseI TTAA 1 cut(s) 210
MspI CCGG 4 cut(s) 321, 416, 443, 469
MspR9I CCNGG 1 cut(s) 416
MunI CAATTG 2 cut(s) 489, 536
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 416
NdeII GATC 1 cut(s) 519
NlaIII CATG 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 106
PagI TCATGA 1 cut(s) 240
PctI GAATGC 1 cut(s) 59
Pfl23II CGTACG 1 cut(s) 181
PflFI GACNNNGTC 2 cut(s) 112, 155
PleI GAGTC 2 cut(s) 91, 259
PpsI GAGTC 2 cut(s) 91, 259
Ppu21I YACGTR 1 cut(s) 185
PspLI CGTACG 1 cut(s) 181
PspPI GGNCC 2 cut(s) 78, 374
PsyI GACNNNGTC 2 cut(s) 112, 155
RsaI GTAC 2 cut(s) 183, 499
RsaNI GTAC 2 cut(s) 182, 498
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 2 cut(s) 78, 374
SchI GAGTC 2 cut(s) 92, 259
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 1 cut(s) 301
SetI ASST 5 cut(s) 135, 187, 288, 336, 359
SfaNI GCATC 1 cut(s) 522
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 192, 300
SmoI CTYRAG 2 cut(s) 192, 300
Sse9I AATT 3 cut(s) 277, 489, 536
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 4 cut(s) 16, 124, 157, 383
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 433
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 277, 489, 536
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 166, 388, 426
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 166, 388, 426
Tth111I GACNNNGTC 2 cut(s) 112, 155
VpaK11BI GGWCC 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.