Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003188

Physical Location & Seq

Genomic Coordinates Reverse (-)

3045636 .. 3049376

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAAACACAGCTCTACATCTGGTGCTGATGGTGTTCATCTCCTTGGTGGTGTCCTTCACTGAAGCGAAGTGGGCTGAGTCCGTGGAGGCAACAAAGGAAGCGACGCCATCGGAGACAGTAACCAACCTCCAGTTCTACTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCTTCCGACACCGAAAAGTCTCCGACACTTTTCGGGGCTTTACTCATGGCTGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTAGGCCGGGCACAAGGGCTATACGGGTCATCCTGCCAGCAGGAACTTGGCCTGATTATGGCCATGAGCTTTGCGTTCTCGGACGGTACGTACAATGGTAGCTCCATTAGTATTTTTGGAAAGAACCCGATCACGAACCCAATTCGGGAGTTGCCGGTTGTGGGTGGAACTGGGGTTTTCCGGTTGGCTCGTGGCTATGCAATTGCCCATACGCATTGGGTAAATGCCACAGCTGGCGATGCAGTTGTTGGATACAATGTCACTTGCGCAGCAGCGTCATCATTGAAGAGAACAGAGAAATTGACCACTGGTTTCAAAACCCAACTCCATTTCTACTTTCACGACACAGTTTCAGGGCCGGCCCAGACGGCAGTTATGGTAGTCCCACCACCCAAGACTGTCAAGCCATCCACCACCTTGTTTGGACAAGTCACCATGTTTGACGACCCGCAAACCAAGGGACCCGAACTCACGTCCAAGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

257

Amino Acids

27.42

Weight (kDa)

6.29

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	41 - 183	1.3e-55	Dirigent-like protein
Dirigent	PF03018	202 - 255	1.3e-13	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21100 AT2G21100
fragaria_vesca	FvH4_2g01681 FvH4_2g01690
malus_domestica	MD05G1117300.v1.1 MD05G1117500.v1.1
prunus_persica	Prupe.8G162100_v2.0.a1
pyrus_communis	pycom05g11150
rosa_chinensis	RchiOBHm_Chr6g0244561 RchiOBHm_Chr6g0244571 RchiOBHm_Chr6g0244581
rosa_laevigata	RLG00000015343 RLG00000015344
rosa_multiflora	Rmu_sc0002522.1_g000008 Rmu_sc0003679.1_g000002 Rmu_sc0006635.1_g000005 Rmu_sc0011292.1_g000012
rosa_roxburghii	Rroxscaffold_7G00215710
rosa_rugosa	Rorug05G0509400 Rorug05G0509500 Rorug05G0509600
rosa_samantha	Rh6AG019400 Rh6AG025200 Rh6AG025300 Rh6AG025400 Rh6BG020000 Rh6BG020100 Rh6CG018300 Rh6CG018400 Rh6CG018500 Rh6DG019400 Rh6DG019500 Rh6DG019600
rosa_wichuraiana	Rw6G000040 Rw6G002050 Rw6G002060 Rw6G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	253
AciI	CCGC	2 cut(s)	251, 734
AcoI	YGGCCR	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	3 cut(s)	180, 373, 377
AfiI	CCNNNNNNNGG	3 cut(s)	343, 430, 446
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	571, 601
AjiI	CACGTC	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	14, 194, 283, 354, 387, 518, 768
AluI	AGCT	7 cut(s)	14, 194, 283, 354, 387, 518, 768
Alw21I	GWGCWC	1 cut(s)	770
Alw26I	GTCTC	3 cut(s)	110, 216, 254
AoxI	GGCC	5 cut(s)	289, 334, 345, 641, 645
ApeKI	GCWGC	2 cut(s)	554, 557
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	3 cut(s)	641, 646, 746
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	247, 709
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	770
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	566, 569
BccI	CCATC	3 cut(s)	25, 118, 700
BceAI	ACGGC	2 cut(s)	161, 669
BciVI	GTATCC	1 cut(s)	530
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	110, 216, 254
BfaI	CTAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	653
BisI	GCNGC	2 cut(s)	555, 558
BlsI	GCNGC	2 cut(s)	556, 559
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	746
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	641, 646, 746
BmiI	GGNNCC	2 cut(s)	747, 748
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	293
BsaAI	YACGTR	2 cut(s)	182, 375
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	45, 84, 741
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 430, 446
Bse118I	RCCGGY	2 cut(s)	439, 643
Bse1I	ACTGG	3 cut(s)	133, 460, 598
BseDI	CCNNGG	3 cut(s)	45, 84, 741
BseGI	GGATG	2 cut(s)	314, 692
BseLI	CCNNNNNNNGG	3 cut(s)	343, 430, 446
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	133, 460, 598
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	566, 569
BshFI	GGCC	5 cut(s)	291, 336, 347, 643, 647
BsiHKAI	GWGCWC	1 cut(s)	770
BsiSI	CCGG	4 cut(s)	292, 440, 466, 644
BsiWI	CGTACG	1 cut(s)	178
BslFI	GGGAC	2 cut(s)	653, 759
BslI	CCNNNNNNNGG	3 cut(s)	343, 430, 446
BsmAI	GTCTC	3 cut(s)	110, 216, 254
BsmFI	GGGAC	2 cut(s)	653, 759
BsnI	GGCC	5 cut(s)	291, 336, 347, 643, 647
Bsp1286I	GDGCHC	2 cut(s)	298, 770
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	251, 734
BspANI	GGCC	5 cut(s)	291, 336, 347, 643, 647
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	747, 748
BsrBI	CCGCTC	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	439, 643
BsrI	ACTGG	3 cut(s)	133, 460, 598
BssAI	RCCGGY	2 cut(s)	439, 643
BssECI	CCNNGG	3 cut(s)	45, 84, 741
BssMI	GATC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	107
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	45, 741
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	5 cut(s)	121, 154, 371, 634, 685
Bst6I	CTCTTC	1 cut(s)	566
BstACI	GRCGYC	1 cut(s)	107
BstBAI	YACGTR	2 cut(s)	182, 375
BstC8I	GCNNGC	3 cut(s)	323, 520, 645
BstDEI	CTNAG	2 cut(s)	78, 771
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	314, 692
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	3 cut(s)	110, 216, 254
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 74, 524, 653
BstSCI	CCNGG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	298
BstSNI	TACGTA	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	566, 569
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	5 cut(s)	291, 336, 347, 643, 647
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	2 cut(s)	314, 692
BtsIMutI	CAGTG	3 cut(s)	60, 163, 591
Cac8I	GCNNGC	3 cut(s)	323, 520, 645
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	2 cut(s)	439, 643
Cfr13I	GGNCC	3 cut(s)	641, 646, 746
CseI	GACGC	2 cut(s)	115, 549
Csp6I	GTAC	3 cut(s)	179, 372, 376
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	3 cut(s)	238, 349, 721
CviQI	GTAC	3 cut(s)	179, 372, 376
DdeI	CTNAG	2 cut(s)	78, 771
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Ecl136II	GAGCTC	1 cut(s)	768
Eco105I	TACGTA	1 cut(s)	375
Eco130I	CCWWGG	2 cut(s)	45, 741
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	768
EcoO109I	RGGNCCY	1 cut(s)	746
EcoT14I	CCWWGG	2 cut(s)	45, 741
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	2 cut(s)	45, 741
FaeI	CATG	3 cut(s)	241, 352, 724
FaiI	YATR	8 cut(s)	239, 307, 344, 350, 483, 495, 662, 722
FaqI	GGGAC	2 cut(s)	653, 759
FatI	CATG	3 cut(s)	237, 348, 720
FauI	CCCGC	2 cut(s)	258, 741
Fnu4HI	GCNGC	2 cut(s)	555, 558
FokI	GGATG	2 cut(s)	301, 679
FriOI	GRGCYC	1 cut(s)	770
FseI	GGCCGGCC	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	555, 558
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	553
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	2 cut(s)	555, 558
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	5 cut(s)	291, 336, 347, 643, 647
HapII	CCGG	4 cut(s)	292, 440, 466, 644
HgaI	GACGC	2 cut(s)	115, 549
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	241, 352, 724
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	2 cut(s)	80, 262
HpaII	CCGG	4 cut(s)	292, 440, 466, 644
HphI	GGTGA	2 cut(s)	247, 709
Hpy188I	TCNGA	4 cut(s)	115, 199, 216, 367
Hpy188III	TCNNGA	4 cut(s)	266, 418, 431, 626
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	5 cut(s)	121, 154, 371, 634, 685
HpyCH4IV	ACGT	3 cut(s)	181, 374, 758
HpyCH4V	TGCA	2 cut(s)	485, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 74, 524, 653
HpyF3I	CTNAG	2 cut(s)	78, 771
HpySE526I	ACGT	3 cut(s)	181, 374, 758
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	241, 352, 724
HspAI	GCGC	1 cut(s)	552
KflI	GGGWCCC	1 cut(s)	746
KroI	GCCGGC	1 cut(s)	643
KroNI	GCCGGC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	566, 569
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	3 cut(s)	181, 374, 758
MaeIII	GTNAC	3 cut(s)	121, 544, 715
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	1 cut(s)	414
MboII	GAAGA	2 cut(s)	175, 583
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	298, 770
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	4 cut(s)	274, 426, 486, 584
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	89, 256
MmeI	TCCRAC	3 cut(s)	222, 239, 514
MnlI	CCTC	2 cut(s)	82, 140
Mox20I	TGGCCA	1 cut(s)	347
MroNI	GCCGGC	1 cut(s)	643
MscI	TGGCCA	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	4 cut(s)	292, 440, 466, 644
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	11, 74, 524, 653
NaeI	GCCGGC	1 cut(s)	645
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	1 cut(s)	414
NgoMIV	GCCGGC	1 cut(s)	643
NlaIII	CATG	3 cut(s)	241, 352, 724
NlaIV	GGNNCC	2 cut(s)	747, 748
NmuCI	GTSAC	2 cut(s)	544, 715
NsbI	TGCGCA	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	645
Pfl23II	CGTACG	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	556, 559
PleI	GAGTC	2 cut(s)	88, 256
PpsI	GAGTC	2 cut(s)	88, 256
Ppu21I	YACGTR	2 cut(s)	182, 375
PpuMI	RGGWCCY	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	746
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	747, 748
PspPI	GGNCC	3 cut(s)	641, 646, 746
PspPPI	RGGWCCY	1 cut(s)	746
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	518
RigI	GGCCGGCC	1 cut(s)	647
RsaI	GTAC	3 cut(s)	180, 373, 377
RsaNI	GTAC	3 cut(s)	179, 372, 376
SacI	GAGCTC	1 cut(s)	770
SatI	GCNGC	2 cut(s)	555, 558
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	3 cut(s)	641, 646, 746
SchI	GAGTC	2 cut(s)	89, 256
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	298, 770
SfaNI	GCATC	1 cut(s)	514
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	375
Sse9I	AATT	4 cut(s)	274, 426, 486, 584
SsiI	CCGC	2 cut(s)	251, 734
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	45, 741
TaaI	ACNGT	5 cut(s)	121, 154, 371, 634, 685
TaiI	ACGT	3 cut(s)	184, 377, 761
TasI	AATT	4 cut(s)	274, 426, 486, 584
TscAI	CASTG	3 cut(s)	67, 163, 598
TseFI	GTSAC	2 cut(s)	544, 715
TseI	GCWGC	2 cut(s)	554, 557
Tsp45I	GTSAC	2 cut(s)	544, 715
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	67, 163, 598
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.