Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003188

Physical Location & Seq

Genomic Coordinates Reverse (-)

3052124 .. 3053583

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG020100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCATGAGCTTTGCGTTCACAGATGGTACGTTCAATGGTAGCTCCATCAGTATTTTTGGTAAAAACCCAGCTCTACACCCGGTTCGGGAGTTGCCGGTTGTGGGTGGAACCGGGGTGTTCCGATTGGCTCGTGGATATGCAATTGCCAAGACTTATCGGCTTGATAGCACTGTCAAACTCACTGGTAAAGCAGTTGGCCCCATGCATTATACTTCCCAAGTCCTGCGGTGGGTAGTTCAACAACATCGAATCCTCGGCCCTTATAATCTGCAGACCGAAACATCCACACATGCATCTCCTTTTTCCTTGGACAAACAAGACACGACAGAAATCAAGCAGAAAATGGCAAACAACACTGTTGCGCCTCTGATGATGATGGTCGTCATCTCCTTGGTGATGGCATTCACAGAAGCCAAGTGGGCCGAGTCAGTAGAGGCCAAAAAGGAAGCGACGCCGTCGGAGACAGTAACCAACCTCCAGTTCTTCTTCCACGACACAGTCAGTGGGAAGAACCCTAGTGCCGTACGTGTGGCTCAAGCCTCCAACACCAATAAGTCTCTGACACTTTTCGGGGCTTTACTCATGGCCGATGACCCGCTCACCGAGACTCCCGACCCCAATTCCAAGCTCGTGGGTCGGGCACAAGGGCTATACGGGTCATCCGGCCAGCAGGAGCTTGGCCTGATTATGGCTATGAGCTTTGCGTTCACGGATGGTCCTTACAGTGGTAGTTCCATTAGTATATTTGGTAAAAACCCGGCACTGAACCCAGTTCGAGAGTTGCCGGTTGTGGGTGGAACTGGGGTGTTCCGGCTGGCTCGTGGATATGCAATTGCCCATACTCATTGGTTTGATCTTAGTGGTGATGCAATTGTAGAATACAATGTCACTGTGATTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

301

Amino Acids

32.54

Weight (kDa)

8.69

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	1 - 58	9.8e-21	Dirigent-like protein
Dirigent	PF03018	157 - 299	3.5e-55	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21100 AT2G21100
fragaria_vesca	FvH4_2g01681 FvH4_2g01690
malus_domestica	MD05G1117300.v1.1 MD05G1117500.v1.1
prunus_persica	Prupe.8G162100_v2.0.a1
pyrus_communis	pycom05g11150
rosa_chinensis	RchiOBHm_Chr6g0244561 RchiOBHm_Chr6g0244571 RchiOBHm_Chr6g0244581
rosa_laevigata	RLG00000015343 RLG00000015344
rosa_multiflora	Rmu_sc0002522.1_g000008 Rmu_sc0003679.1_g000002 Rmu_sc0006635.1_g000005 Rmu_sc0011292.1_g000012
rosa_roxburghii	Rroxscaffold_7G00215710
rosa_rugosa	Rorug05G0509400 Rorug05G0509500 Rorug05G0509600
rosa_samantha	Rh6AG019400 Rh6AG025200 Rh6AG025300 Rh6AG025400 Rh6BG020000 Rh6BG020100 Rh6CG018300 Rh6CG018400 Rh6CG018500 Rh6DG019400 Rh6DG019500 Rh6DG019600
rosa_wichuraiana	Rw6G000040 Rw6G002050 Rw6G002060 Rw6G002070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	601
AciI	CCGC	2 cut(s)	229, 599
AcoI	YGGCCR	3 cut(s)	3, 588, 667
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	2 cut(s)	31, 528
AfiI	CCNNNNNNNGG	6 cut(s)	88, 104, 232, 691, 728, 794
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	37, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	6 cut(s)	12, 45, 74, 631, 679, 702
AluI	AGCT	6 cut(s)	12, 45, 74, 631, 679, 702
Alw26I	GTCTC	3 cut(s)	458, 564, 602
AoxI	GGCC	8 cut(s)	3, 199, 259, 423, 438, 588, 667, 682
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	4 cut(s)	200, 260, 423, 719
AsuC2I	CCSGG	3 cut(s)	83, 115, 761
AsuHPI	GGTGA	3 cut(s)	409, 595, 878
AvaII	GGWCC	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	3 cut(s)	132, 632, 822
BccI	CCATC	5 cut(s)	20, 56, 373, 394, 710
BceAI	ACGGC	2 cut(s)	442, 509
BcnI	CCSGG	3 cut(s)	83, 115, 761
BcoDI	GTCTC	3 cut(s)	458, 564, 602
BfaI	CTAG	2 cut(s)	519, 904
BfmI	CTRYAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	422
Bme1390I	CCNGG	3 cut(s)	83, 115, 761
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	4 cut(s)	200, 260, 423, 719
BmiI	GGNNCC	2 cut(s)	112, 202
BmrFI	CCNGG	3 cut(s)	83, 115, 761
BmrI	ACTGGG	2 cut(s)	767, 813
BmsI	GCATC	2 cut(s)	305, 859
BmuI	ACTGGG	2 cut(s)	767, 813
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	3 cut(s)	83, 115, 761
BsaAI	YACGTR	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	114, 256, 309, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 104, 232, 691, 728, 794
Bse118I	RCCGGY	2 cut(s)	97, 787
Bse1I	ACTGG	4 cut(s)	190, 481, 773, 808
BseDI	CCNNGG	4 cut(s)	114, 256, 309, 393
BseGI	GGATG	3 cut(s)	284, 662, 721
BseLI	CCNNNNNNNGG	6 cut(s)	88, 104, 232, 691, 728, 794
BseNI	ACTGG	4 cut(s)	190, 481, 773, 808
BseSI	GKGCMC	1 cut(s)	646
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	8 cut(s)	5, 201, 261, 425, 440, 590, 669, 684
BsiSI	CCGG	7 cut(s)	83, 98, 114, 666, 761, 788, 814
BsiWI	CGTACG	1 cut(s)	526
BslI	CCNNNNNNNGG	6 cut(s)	88, 104, 232, 691, 728, 794
BsmAI	GTCTC	3 cut(s)	458, 564, 602
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	8 cut(s)	5, 201, 261, 425, 440, 590, 669, 684
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	1 cut(s)	856
BspACI	CCGC	2 cut(s)	229, 599
BspANI	GGCC	8 cut(s)	5, 201, 261, 425, 440, 590, 669, 684
BspLI	GGNNCC	2 cut(s)	112, 202
BspMAI	CTGCAG	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	601
BsrFI	RCCGGY	2 cut(s)	97, 787
BsrI	ACTGG	4 cut(s)	190, 481, 773, 808
BssAI	RCCGGY	2 cut(s)	97, 787
BssECI	CCNNGG	4 cut(s)	114, 256, 309, 393
BssMI	GATC	1 cut(s)	856
BssNI	GRCGYC	1 cut(s)	455
BssSI	CACGAG	3 cut(s)	132, 632, 822
BssT1I	CCWWGG	2 cut(s)	309, 393
Bst2BI	CACGAG	3 cut(s)	132, 632, 822
Bst4CI	ACNGT	6 cut(s)	175, 361, 469, 502, 728, 895
BstACI	GRCGYC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	2 cut(s)	671, 819
BstDEI	CTNAG	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	284, 662, 721
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	1 cut(s)	859
BstMAI	GTCTC	3 cut(s)	458, 564, 602
BstMBI	GATC	1 cut(s)	856
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	81, 113, 759
BstSFI	CTRYAG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	646
BstXI	CCANNNNNNTGG	1 cut(s)	634
BsuRI	GGCC	8 cut(s)	5, 201, 261, 425, 440, 590, 669, 684
BtsCI	GGATG	3 cut(s)	284, 662, 721
BtsIMutI	CAGTG	7 cut(s)	171, 183, 357, 511, 733, 764, 891
Cac8I	GCNNGC	2 cut(s)	671, 819
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	97, 787
Cfr13I	GGNCC	4 cut(s)	200, 260, 423, 719
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	30, 527
CviAII	CATG	4 cut(s)	7, 205, 293, 586
CviQI	GTAC	2 cut(s)	30, 527
DdeI	CTNAG	1 cut(s)	860
DpnI	GATC	1 cut(s)	858
DpnII	GATC	1 cut(s)	856
EaeI	YGGCCR	3 cut(s)	3, 588, 667
Eco130I	CCWWGG	2 cut(s)	309, 393
Eco47I	GGWCC	1 cut(s)	719
EcoT14I	CCWWGG	2 cut(s)	309, 393
EcoT22I	ATGCAT	2 cut(s)	210, 298
ErhI	CCWWGG	2 cut(s)	309, 393
FaeI	CATG	4 cut(s)	10, 208, 296, 589
FatI	CATG	4 cut(s)	6, 204, 292, 585
FauI	CCCGC	1 cut(s)	606
FokI	GGATG	3 cut(s)	271, 649, 728
FspBI	CTAG	2 cut(s)	519, 904
GlaI	GCGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	8 cut(s)	5, 201, 261, 425, 440, 590, 669, 684
HapII	CCGG	7 cut(s)	83, 98, 114, 666, 761, 788, 814
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	10, 208, 296, 589
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	4 cut(s)	252, 428, 610, 898
HpaII	CCGG	7 cut(s)	83, 98, 114, 666, 761, 788, 814
HphI	GGTGA	3 cut(s)	409, 595, 878
Hpy166II	GTNNAC	2 cut(s)	21, 711
Hpy188I	TCNGA	4 cut(s)	125, 372, 463, 564
Hpy188III	TCNNGA	3 cut(s)	89, 614, 779
Hpy8I	GTNNAC	2 cut(s)	21, 711
Hpy99I	CGWCG	2 cut(s)	457, 463
HpyCH4III	ACNGT	6 cut(s)	175, 361, 469, 502, 728, 895
HpyCH4IV	ACGT	2 cut(s)	32, 529
HpyCH4V	TGCA	6 cut(s)	143, 208, 274, 296, 833, 872
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	860
HpySE526I	ACGT	2 cut(s)	32, 529
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	10, 208, 296, 589
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	856
LmnI	GCTCC	2 cut(s)	50, 676
LweI	GCATC	2 cut(s)	305, 859
MaeI	CTAG	2 cut(s)	519, 904
MaeII	ACGT	2 cut(s)	32, 529
MaeIII	GTNAC	2 cut(s)	469, 889
MalI	GATC	1 cut(s)	858
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	1 cut(s)	856
MboII	GAAGA	3 cut(s)	478, 481, 523
MfeI	CAATTG	3 cut(s)	144, 834, 873
MhlI	GDGCHC	1 cut(s)	646
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	144, 622, 834, 873
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	437, 604
MmeI	TCCRAC	2 cut(s)	441, 570
MnlI	CCTC	5 cut(s)	266, 378, 430, 488, 553
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	210, 298
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	83, 98, 114, 666, 761, 788, 814
MspR9I	CCNGG	3 cut(s)	83, 115, 761
MunI	CAATTG	3 cut(s)	144, 834, 873
Mva1269I	GAATGC	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	3 cut(s)	83, 115, 761
NdeII	GATC	1 cut(s)	856
NlaIII	CATG	4 cut(s)	10, 208, 296, 589
NlaIV	GGNNCC	2 cut(s)	112, 202
NmeAIII	GCCGAG	2 cut(s)	237, 451
NmuCI	GTSAC	1 cut(s)	889
NsiI	ATGCAT	2 cut(s)	210, 298
NspI	RCATGY	1 cut(s)	296
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	252, 898
Pfl23II	CGTACG	1 cut(s)	526
PflFI	GACNNNGTC	2 cut(s)	457, 500
PleI	GAGTC	2 cut(s)	436, 604
PpsI	GAGTC	2 cut(s)	436, 604
Ppu21I	YACGTR	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	70
PspLI	CGTACG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	112, 202
PspPI	GGNCC	4 cut(s)	200, 260, 423, 719
PstI	CTGCAG	1 cut(s)	276
PsyI	GACNNNGTC	2 cut(s)	457, 500
RsaI	GTAC	2 cut(s)	31, 528
RsaNI	GTAC	2 cut(s)	30, 527
Sau3AI	GATC	1 cut(s)	856
Sau96I	GGNCC	4 cut(s)	200, 260, 423, 719
SchI	GAGTC	2 cut(s)	437, 604
ScrFI	CCNGG	3 cut(s)	83, 115, 761
SduI	GDGCHC	1 cut(s)	646
SetI	ASST	9 cut(s)	14, 35, 47, 76, 480, 532, 633, 681, 704
SfaNI	GCATC	2 cut(s)	305, 859
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	4 cut(s)	144, 622, 834, 873
SsiI	CCGC	2 cut(s)	229, 599
SspMI	CTAG	2 cut(s)	519, 904
StyD4I	CCNGG	3 cut(s)	81, 113, 759
StyI	CCWWGG	2 cut(s)	309, 393
TaaI	ACNGT	6 cut(s)	175, 361, 469, 502, 728, 895
TaiI	ACGT	2 cut(s)	35, 532
TaqI	TCGA	2 cut(s)	250, 778
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	4 cut(s)	144, 622, 834, 873
TfiI	GAWTC	2 cut(s)	252, 898
TscAI	CASTG	7 cut(s)	178, 190, 364, 511, 733, 771, 898
TseFI	GTSAC	1 cut(s)	889
Tsp45I	GTSAC	1 cut(s)	889
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	7 cut(s)	178, 190, 364, 511, 733, 771, 898
Tth111I	GACNNNGTC	2 cut(s)	457, 500
VpaK11BI	GGWCC	1 cut(s)	719
XceI	RCATGY	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XspI	CTAG	2 cut(s)	519, 904
Zsp2I	ATGCAT	2 cut(s)	210, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.