Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095654.1

Orthogroup ID

OG0002531

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 597

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095654.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 596 bp

tggaatcacggtctccggtttgagacgaaccaccgtcgggcggcgcaacccccagttcgccgtggattctttagccaattttacattcttggctacttttaatgcttctgggttttcgcttccggggtctataccggactggtttggccagagacttggttcactccaagtgcttgatctaaggtctgcttctgtcattggtgctatacctgagtcacttagtaatttgacaaagcttaagtctttgcatttatctggtaatgatattactggtattgtgccttctgcattggggaacttggttggcttggaggttcttgatgtttcgaggaattcgtttactgggtccataccttctgcttttgcctcccttggaaatcttacaatgcttgacctttcttcaaatttcctatccgggccaattccaccgggtttaggcaccctttcgagacttcagttcctgaacctgtctgataatagtctcactgattccataccggttcagcttggcaagctttcccagttgctcggacttgactttagcaagaactctttgtctgggacattgcctgtggagttgagagggttgaggagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

198

Amino Acids

20.82

Weight (kDa)

9.96

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16250 AT2G16250
fragaria_vesca	FvH4_2g08850 FvH4_2g39760 FvH4_2g39760 FvH4_2g39760 FvH4_2g39760
malus_domestica	MD05G1065800.v1.1 MD08G1031300.v1.1 MD10G1075800.v1.1 MD15G1027100.v1.1
prunus_persica	Prupe.1G378900_v2.0.a1 Prupe.8G096500_v2.0.a1 Prupe.8G096500_v2.0.a1 Prupe.8G096500_v2.0.a1 Prupe.8G096500_v2.0.a1
pyrus_communis	pycom05g05720 pycom08g02470 pycom10g05940 pycom15g02310
rosa_chinensis	RchiOBHm_Chr6g0264451 RchiOBHm_Chr6g0301101
rosa_laevigata	RLG00000011278 RLG00000014252
rosa_multiflora	Rmu_co8095654.1_g000001 Rmu_sc0004470.1_g000003
rosa_roxburghii	Rroxscaffold_172G00445540 Rroxscaffold_176G00431810 Rroxscaffold_7G00167160
rosa_rugosa	Rorug06G0012700 Rorug06G0012800 Rorug06G0301300
rosa_samantha	Rh6AG132200 Rh6AG414700 Rh6BG129500 Rh6BG421700 Rh6CG127700 Rh6CG429300 Rh6DG115000 Rh6DG414600
rosa_wichuraiana	Rw6G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AciI	CCGC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	332, 404
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	37, 40, 435
AflII	CTTAAG	1 cut(s)	237
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	236, 506, 515
AluI	AGCT	3 cut(s)	236, 506, 515
Alw26I	GTCTC	5 cut(s)	17, 17, 146, 443, 486
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	146, 417
ApoI	RAATTY	2 cut(s)	332, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AsiGI	ACCGGT	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	346, 417
AsuC2I	CCSGG	3 cut(s)	124, 416, 430
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	266, 298
BceAI	ACGGC	1 cut(s)	45
BcnI	CCSGG	3 cut(s)	124, 416, 430
BcoDI	GTCTC	5 cut(s)	17, 17, 146, 443, 486
BfrI	CTTAAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	3 cut(s)	124, 416, 430
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	346, 417
BmiI	GGNNCC	2 cut(s)	347, 440
BmrFI	CCNGG	3 cut(s)	124, 416, 430
BmrI	ACTGGG	3 cut(s)	47, 352, 515
BmuI	ACTGGG	3 cut(s)	47, 352, 515
BpuMI	CCSGG	3 cut(s)	124, 416, 430
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	61, 123, 371
BsaWI	WCCGGW	3 cut(s)	15, 134, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 40, 435
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	5 cut(s)	53, 144, 275, 347, 521
Bse3DI	GCAATG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	61, 123, 371
BseLI	CCNNNNNNNGG	3 cut(s)	37, 40, 435
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	5 cut(s)	53, 144, 275, 347, 521
BshFI	GGCC	2 cut(s)	148, 419
BshNI	GGYRCC	1 cut(s)	438
BshTI	ACCGGT	1 cut(s)	497
BsiSI	CCGG	6 cut(s)	16, 123, 135, 415, 429, 498
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	37, 40, 435
BsmAI	GTCTC	5 cut(s)	17, 17, 146, 443, 486
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	148, 419
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	148, 419
BspCNI	CTCAG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	347, 440
BspT107I	GGYRCC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	5 cut(s)	53, 144, 275, 347, 521
BssAI	RCCGGY	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	61, 123, 371
BssMI	GATC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	11, 35
BstAFI	CTTAAG	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	180, 211, 219
BstDSI	CCRYGG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	5 cut(s)	17, 17, 146, 443, 486
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstSCI	CCNGG	3 cut(s)	122, 414, 428
BstXI	CCANNNNNNTGG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	148, 419
BtgI	CCRYGG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	497
Cfr13I	GGNCC	2 cut(s)	346, 417
CspAI	ACCGGT	1 cut(s)	497
CviJI	RGCY	8 cut(s)	75, 93, 148, 236, 307, 419, 506, 515
CviKI_1	RGCY	8 cut(s)	75, 93, 148, 236, 307, 419, 506, 515
DdeI	CTNAG	3 cut(s)	180, 211, 219
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	17
FaiI	YATR	4 cut(s)	132, 207, 351, 495
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	575
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	148, 419
HapII	CCGG	6 cut(s)	16, 123, 135, 415, 429, 498
HhaI	GCGC	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	234, 513
HinfI	GANTC	4 cut(s)	4, 66, 213, 489
HpaII	CCGG	6 cut(s)	16, 123, 135, 415, 429, 498
Hpy166II	GTNNAC	2 cut(s)	162, 340
Hpy188I	TCNGA	2 cut(s)	473, 531
Hpy188III	TCNNGA	3 cut(s)	318, 448, 461
Hpy8I	GTNNAC	2 cut(s)	162, 340
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	292, 364
HpyCH4III	ACNGT	2 cut(s)	11, 35
HpyCH4V	TGCA	2 cut(s)	248, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	180, 211, 219
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	5 cut(s)	77, 224, 332, 404, 421
MluNI	TGGCCA	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	305, 322, 377, 576, 583
Mox20I	TGGCCA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	2 cut(s)	100, 238
Msp20I	TGGCCA	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	237
MspI	CCGG	6 cut(s)	16, 123, 135, 415, 429, 498
MspR9I	CCNGG	3 cut(s)	124, 416, 430
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	3 cut(s)	124, 416, 430
NdeII	GATC	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	347, 440
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	4, 66, 489
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	347, 440
PspPI	GGNCC	2 cut(s)	346, 417
PstNI	CAGNNNCTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	100, 238
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	2 cut(s)	346, 417
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	3 cut(s)	124, 416, 430
SetI	ASST	9 cut(s)	186, 212, 238, 316, 356, 397, 469, 508, 517
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	77, 224, 332, 404, 421
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	3 cut(s)	122, 414, 428
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	11, 35
TaqI	TCGA	2 cut(s)	327, 447
TasI	AATT	5 cut(s)	77, 224, 332, 404, 421
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	4, 66, 489
Tru1I	TTAA	2 cut(s)	100, 238
Tru9I	TTAA	2 cut(s)	100, 238
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspRI	CASTG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	332, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.