Rorug06G0012700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
1686998 .. 1688909
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0012700.1

Sequence Viewer

Length: 351 bp
ATGGCTCTCCAAGCAACTGAGAAAGTTTTGAGCATCAACACCATAGTTCAGCTGAATGGTAGTAATTACAAGAAGTGGAGGACTGACCTAGACCTTTATTTGCTTGACCAAAGTGTGGACTGGTGCTTAACTGTGGCTGAACTTGTAGTAACCAATGAGAGTACAGACCAAGAAAAGGAACTTCACAAAGATTGGGCCAGGGCAAATAGAATCAGTAGATTGACTATTATGAAAACTTTGTCTGACACAGTGAGGGGTGCCATTCCTGAGAAAGCCTTAGCTTCAGAGTACCTTCAAAGCATAGCTGAGAAGTTCACTACCAATGACAAAATAAAGGCTGCATGCTGCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.14

Weight (kDa)

5.82

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 163, 290
AfiI CCNNNNNNNGG 2 cut(s) 115, 175
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 52, 281, 305
AluI AGCT 3 cut(s) 52, 281, 305
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 338, 345
AspS9I GGNCC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 325, 332
BciT130I CCWGG 1 cut(s) 199
BfaI CTAG 2 cut(s) 89, 349
BisI GCNGC 2 cut(s) 339, 346
BlsI GCNGC 2 cut(s) 340, 347
Bme1390I CCNGG 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 175
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 115, 175
BseMII CTCAG 3 cut(s) 9, 258, 297
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 325, 332
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 115, 175
BsnI GGCC 1 cut(s) 197
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 3 cut(s) 10, 259, 298
BspLI GGNNCC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 133, 250
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 4 cut(s) 18, 267, 277, 306
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 325, 332
BsuRI GGCC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 162, 289
CviAII CATG 1 cut(s) 342
CviJI RGCY 8 cut(s) 5, 52, 137, 197, 275, 281, 305, 338
CviKI_1 RGCY 8 cut(s) 5, 52, 137, 197, 275, 281, 305, 338
CviQI GTAC 2 cut(s) 162, 289
DdeI CTNAG 4 cut(s) 18, 267, 277, 306
Eco57I CTGAAG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 345
FaiI YATR 4 cut(s) 44, 230, 302, 343
FatI CATG 1 cut(s) 341
Fnu4HI GCNGC 2 cut(s) 339, 346
Fsp4HI GCNGC 2 cut(s) 339, 346
FspBI CTAG 2 cut(s) 89, 349
GluI GCNGC 2 cut(s) 339, 346
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 1 cut(s) 345
HinfI GANTC 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 118, 315
Hpy188I TCNGA 2 cut(s) 244, 286
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 118, 315
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 133, 250
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 18, 267, 277, 306
Hsp92II CATG 1 cut(s) 345
LpnPI CCDG 4 cut(s) 106, 184, 211, 279
Lsp1109I GCAGC 2 cut(s) 325, 332
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 89, 349
MaeIII GTNAC 1 cut(s) 148
MluCI AATT 1 cut(s) 64
MnlI CCTC 2 cut(s) 72, 246
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 259
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 2 cut(s) 340, 347
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 2 cut(s) 163, 290
RsaNI GTAC 2 cut(s) 162, 289
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 339, 346
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 199
SetI ASST 6 cut(s) 54, 90, 96, 283, 294, 307
SfaNI GCATC 1 cut(s) 42
SphI GCATGC 1 cut(s) 345
Sse9I AATT 1 cut(s) 64
SspMI CTAG 2 cut(s) 89, 349
StyD4I CCNGG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 133, 250
TasI AATT 1 cut(s) 64
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 338, 345
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 115
XceI RCATGY 1 cut(s) 345
XspI CTAG 2 cut(s) 89, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.