Rorug06G0301300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002531
Physical Location & Seq
Reverse (-)
45281652 .. 45282716
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0301300.1

Sequence Viewer

Length: 1065 bp
ATGGCTACCGGGTGGTGCGATTCTCTTCCGAATTACCTTGTCTCTCTCGGCGAAAGGCTGGCATTTTTCTGGAACAAGTTTATCACTGCAGTGCGGAAATCATTCGGCGCTGATCAAATTCCTCTTCTTATGCTTCCGAAGAGGATTGATGCCTCCATGGTTCAGTTTTACTCCGTCGCAAAAGGTGAGATTTACAACTCCAATCTCCCAGAAACCAGTGGTAAGACCTGCTTTGCTTCCCTAGGATGGCTGCTTACTGTAACTAGTGATCAAGGGGAATTGAAATTTAATATGCTCCACCCATCAAATCATCATGCCCAAATTCAACTTCCTGGTTTGCTGCGCTGTCCGCTCGAGAATATTTGGAAGTTTGCTTTGTCGTCCAATCCTCGTTCCACATTGGATTATATAGTCATGTTTCAGACAGCTACTACTTTGGGATTTTGCAGACCAGGACTGGGCGGCCAAGGTTGGAAACATCTCAGATTTGAGGGCCACAATTTCATTAGGGATCTCACACACTATCAAGGAAGTTTCTACGTTGTGGACCAGTCTGGCCGTGTTTCTGTTGTTTGTGAAATTGATGACCCTAAGCGAGCACATTTGAGTGTTGTTGCTCCAGAGATTCCGAGTAAGGAGCAACTTCTAGGTCCTAAGAAGGGCATTAAACAGCTATATCTGGTGGAATCTGCAGGGTCTCTATTGGTGGTTTTGTGTACTTCCTACCATAATCATTATGAATCAACTATTGGCTGCAGGGTTTTCAAGGTCCCATTCAGTAATGGCAATTCATGGTCCGACTCAGAGGTAAAGGATTTGGGTAATAGAGCCCTCTTCTTGAGTAACAGCAGTTCTTCATTCTCTATTGAGGGCTCAGGCAATTCCGGATGCAAGCCCAATTGCATATATTTCCTGAACAGCAAAAGGGTCACTCCATTCGTTGACTTAGATGTTGGTATTTTTAATATGGAGGATGGGACAATTGATCGAGACTTCAGCAATTCCTTCAATTCCGGGTTTGAAGAAATCAGAGAATCCCATCTATGGATTCAACCGAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.6

Weight (kDa)

6.79

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 56 - 322 6.7e-45 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 884
AciI CCGC 3 cut(s) 94, 350, 462
AclWI GGATC 1 cut(s) 519
AcoI YGGCCR 2 cut(s) 463, 556
AcsI RAATTY 3 cut(s) 117, 284, 321
AcuI CTGAAG 1 cut(s) 979
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 4 cut(s) 246, 458, 659, 1044
AgsI TTSAA 6 cut(s) 283, 326, 766, 1009, 1022, 1052
AhlI ACTAGT 1 cut(s) 263
AjnI CCWGG 2 cut(s) 331, 451
AjuI GAANNNNNNNTTGG 4 cut(s) 312, 344, 732, 764
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 2 cut(s) 428, 673
AluI AGCT 2 cut(s) 428, 673
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 3 cut(s) 46, 702, 984
AlwI GGATC 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 884
AoxI GGCC 3 cut(s) 463, 493, 556
ApeKI GCWGC 3 cut(s) 250, 340, 753
ApoI RAATTY 3 cut(s) 117, 284, 321
Asp700I GAANNNNTTC 1 cut(s) 101
AspA2I CCTAGG 1 cut(s) 241
AspLEI GCGC 2 cut(s) 110, 345
AspS9I GGNCC 5 cut(s) 493, 547, 650, 769, 795
AsuC2I CCSGG 2 cut(s) 10, 1015
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 4 cut(s) 547, 650, 769, 795
AvrII CCTAGG 1 cut(s) 241
BanII GRGCYC 2 cut(s) 832, 875
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 237, 327, 740
BccI CCATC 4 cut(s) 240, 310, 968, 1047
BceAI ACGGC 1 cut(s) 543
BciT130I CCWGG 2 cut(s) 333, 453
BclI TGATCA 2 cut(s) 112, 268
BcnI CCSGG 2 cut(s) 10, 1015
BcoDI GTCTC 3 cut(s) 46, 702, 984
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 3 cut(s) 242, 264, 647
BfmI CTRYAG 3 cut(s) 87, 690, 754
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 4 cut(s) 251, 341, 463, 754
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 4 cut(s) 252, 342, 464, 755
Bme1390I CCNGG 4 cut(s) 10, 333, 453, 1015
Bme18I GGWCC 4 cut(s) 547, 650, 769, 795
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 5 cut(s) 493, 547, 650, 769, 795
BmiI GGNNCC 1 cut(s) 771
BmrFI CCNGG 4 cut(s) 10, 333, 453, 1015
BmrI ACTGGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 139, 878
BmuI ACTGGG 1 cut(s) 467
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 2 cut(s) 591, 874
BpuEI CTTGAG 1 cut(s) 859
BpuMI CCSGG 2 cut(s) 10, 1015
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 156, 241, 466
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 458, 659, 1044
Bse1I ACTGG 3 cut(s) 216, 462, 550
BseAI TCCGGA 1 cut(s) 884
BseBI CCWGG 2 cut(s) 333, 453
BseDI CCNNGG 3 cut(s) 156, 241, 466
BseGI GGATG 3 cut(s) 251, 893, 979
BseLI CCNNNNNNNGG 4 cut(s) 246, 458, 659, 1044
BseMII CTCAG 3 cut(s) 496, 816, 888
BseNI ACTGG 3 cut(s) 216, 462, 550
BseXI GCAGC 3 cut(s) 237, 327, 740
BshFI GGCC 3 cut(s) 465, 495, 558
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 3 cut(s) 9, 885, 1014
BslFI GGGAC 2 cut(s) 755, 991
BslI CCNNNNNNNGG 4 cut(s) 246, 458, 659, 1044
BsmAI GTCTC 3 cut(s) 46, 702, 984
BsmFI GGGAC 2 cut(s) 755, 991
BsnI GGCC 3 cut(s) 465, 495, 558
Bso31I GGTCTC 1 cut(s) 702
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 3 cut(s) 601, 832, 875
Bsp13I TCCGGA 1 cut(s) 884
Bsp143I GATC 4 cut(s) 112, 268, 511, 985
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 3 cut(s) 94, 350, 462
BspANI GGCC 3 cut(s) 465, 495, 558
BspCNI CTCAG 3 cut(s) 495, 815, 887
BspEI TCCGGA 1 cut(s) 884
BspLI GGNNCC 1 cut(s) 771
BspMAI CTGCAG 3 cut(s) 91, 694, 758
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 702
BsrBI CCGCTC 1 cut(s) 352
BsrI ACTGG 3 cut(s) 216, 462, 550
BssECI CCNNGG 3 cut(s) 156, 241, 466
BssMI GATC 4 cut(s) 112, 268, 511, 985
BssT1I CCWWGG 3 cut(s) 156, 241, 466
Bst2UI CCWGG 2 cut(s) 333, 453
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 4 cut(s) 30, 129, 134, 839
BstC8I GCNNGC 3 cut(s) 60, 597, 893
BstDEI CTNAG 6 cut(s) 482, 591, 654, 802, 874, 946
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 251, 893, 979
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 345
BstKTI GATC 4 cut(s) 115, 271, 514, 988
BstMAI GTCTC 3 cut(s) 46, 702, 984
BstMBI GATC 4 cut(s) 112, 268, 511, 985
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 2 cut(s) 333, 453
BstSCI CCNGG 4 cut(s) 8, 331, 451, 1013
BstSFI CTRYAG 3 cut(s) 87, 690, 754
BstV1I GCAGC 3 cut(s) 237, 327, 740
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 3 cut(s) 465, 495, 558
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 251, 893, 979
BtsI GCAGTG 2 cut(s) 84, 96
BtsIMutI CAGTG 3 cut(s) 84, 96, 223
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 3 cut(s) 60, 597, 893
CfoI GCGC 2 cut(s) 110, 345
Cfr13I GGNCC 5 cut(s) 493, 547, 650, 769, 795
Csp6I GTAC 1 cut(s) 717
CviAII CATG 4 cut(s) 157, 314, 415, 792
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 6 cut(s) 482, 591, 654, 802, 874, 946
DpnI GATC 4 cut(s) 114, 270, 513, 987
DpnII GATC 4 cut(s) 112, 268, 511, 985
EaeI YGGCCR 2 cut(s) 463, 556
Eam1104I CTCTTC 4 cut(s) 30, 129, 134, 839
EarI CTCTTC 4 cut(s) 30, 129, 134, 839
Eco130I CCWWGG 3 cut(s) 156, 241, 466
Eco24I GRGCYC 2 cut(s) 832, 875
Eco31I GGTCTC 1 cut(s) 702
Eco47I GGWCC 4 cut(s) 547, 650, 769, 795
Eco57I CTGAAG 1 cut(s) 979
Eco88I CYCGRG 1 cut(s) 353
EcoO109I RGGNCCY 2 cut(s) 650, 769
EcoRII CCWGG 2 cut(s) 331, 451
EcoT14I CCWWGG 3 cut(s) 156, 241, 466
EcoT38I GRGCYC 2 cut(s) 832, 875
ErhI CCWWGG 3 cut(s) 156, 241, 466
FaeI CATG 4 cut(s) 160, 317, 418, 795
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 2 cut(s) 755, 991
FatI CATG 4 cut(s) 156, 313, 414, 791
FbaI TGATCA 2 cut(s) 112, 268
Fnu4HI GCNGC 4 cut(s) 251, 341, 463, 754
FokI GGATG 3 cut(s) 258, 900, 986
FriOI GRGCYC 2 cut(s) 832, 875
Fsp4HI GCNGC 4 cut(s) 251, 341, 463, 754
FspBI CTAG 3 cut(s) 242, 264, 647
GlaI GCGC 2 cut(s) 109, 344
GluI GCNGC 4 cut(s) 251, 341, 463, 754
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 465, 495, 558
HapII CCGG 3 cut(s) 9, 885, 1014
HhaI GCGC 2 cut(s) 110, 345
Hin1II CATG 4 cut(s) 160, 317, 418, 795
Hin6I GCGC 2 cut(s) 108, 343
HinP1I GCGC 2 cut(s) 108, 343
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 7 cut(s) 20, 625, 686, 740, 800, 1034, 1048
HpaII CCGG 3 cut(s) 9, 885, 1014
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 547, 717, 943
Hpy188I TCNGA 9 cut(s) 30, 138, 423, 485, 630, 799, 805, 1031, 1064
Hpy188III TCNNGA 7 cut(s) 70, 355, 620, 838, 885, 913, 989
Hpy8I GTNNAC 3 cut(s) 547, 717, 943
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 652, 1015
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 6 cut(s) 89, 447, 692, 756, 891, 903
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 6 cut(s) 482, 591, 654, 802, 874, 946
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 4 cut(s) 160, 317, 418, 795
HspAI GCGC 2 cut(s) 108, 343
Kpn2I TCCGGA 1 cut(s) 884
Ksp22I TGATCA 2 cut(s) 112, 268
Kzo9I GATC 4 cut(s) 112, 268, 511, 985
LmnI GCTCC 3 cut(s) 300, 622, 637
Lsp1109I GCAGC 3 cut(s) 237, 327, 740
LweI GCATC 2 cut(s) 139, 878
MaeI CTAG 3 cut(s) 242, 264, 647
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 259, 842, 928
MalI GATC 4 cut(s) 114, 270, 513, 987
MbiI CCGCTC 1 cut(s) 352
MboI GATC 4 cut(s) 112, 268, 511, 985
MboII GAAGA 6 cut(s) 17, 116, 151, 826, 846, 1034
MfeI CAATTG 2 cut(s) 898, 981
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 3 cut(s) 601, 832, 875
MlyI GAGTC 1 cut(s) 794
MmeI TCCRAC 2 cut(s) 452, 822
MnlI CCTC 9 cut(s) 132, 135, 163, 399, 484, 799, 842, 862, 964
MroI TCCGGA 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 3 cut(s) 288, 666, 963
MslI CAYNNNNRTG 2 cut(s) 89, 606
MspI CCGG 3 cut(s) 9, 885, 1014
MspR9I CCNGG 4 cut(s) 10, 333, 453, 1015
MunI CAATTG 2 cut(s) 898, 981
MvaI CCWGG 2 cut(s) 333, 453
MwoI GCNNNNNNNGC 1 cut(s) 349
NciI CCSGG 2 cut(s) 10, 1015
NcoI CCATGG 1 cut(s) 156
NdeII GATC 4 cut(s) 112, 268, 511, 985
NlaIII CATG 4 cut(s) 160, 317, 418, 795
NlaIV GGNNCC 1 cut(s) 771
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 928
OliI CACNNNNGTG 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 6 cut(s) 20, 625, 686, 740, 1034, 1048
PkrI GCNGC 4 cut(s) 252, 342, 464, 755
PleI GAGTC 1 cut(s) 794
PpsI GAGTC 1 cut(s) 794
PpuMI RGGWCCY 2 cut(s) 650, 769
Psp5II RGGWCCY 2 cut(s) 650, 769
Psp6I CCWGG 2 cut(s) 331, 451
PspGI CCWGG 2 cut(s) 331, 451
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 5 cut(s) 493, 547, 650, 769, 795
PspPPI RGGWCCY 2 cut(s) 650, 769
PsrI GAACNNNNNNTAC 2 cut(s) 835, 867
PstI CTGCAG 3 cut(s) 91, 694, 758
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 2 cut(s) 89, 606
SaqAI TTAA 3 cut(s) 288, 666, 963
SatI GCNGC 4 cut(s) 251, 341, 463, 754
Sau3AI GATC 4 cut(s) 112, 268, 511, 985
Sau96I GGNCC 5 cut(s) 493, 547, 650, 769, 795
SchI GAGTC 1 cut(s) 794
ScrFI CCNGG 4 cut(s) 10, 333, 453, 1015
SduI GDGCHC 3 cut(s) 601, 832, 875
SfaNI GCATC 2 cut(s) 139, 878
SfcI CTRYAG 3 cut(s) 87, 690, 754
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 4 cut(s) 547, 650, 769, 795
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 89, 606
SmlI CTYRAG 2 cut(s) 353, 838
SmoI CTYRAG 2 cut(s) 353, 838
SpeI ACTAGT 1 cut(s) 263
SsiI CCGC 3 cut(s) 94, 350, 462
SspI AATATT 1 cut(s) 361
SspMI CTAG 3 cut(s) 242, 264, 647
StyD4I CCNGG 4 cut(s) 8, 331, 451, 1013
StyI CCWWGG 3 cut(s) 156, 241, 466
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 543
TaqI TCGA 2 cut(s) 354, 988
TatI WGTACW 1 cut(s) 716
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 6 cut(s) 20, 625, 686, 740, 1034, 1048
Tru1I TTAA 3 cut(s) 288, 666, 963
Tru9I TTAA 3 cut(s) 288, 666, 963
TscAI CASTG 3 cut(s) 91, 96, 223
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 3 cut(s) 250, 340, 753
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 4 cut(s) 493, 753, 780, 846
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 3 cut(s) 91, 96, 223
VpaK11BI GGWCC 4 cut(s) 547, 650, 769, 795
XapI RAATTY 3 cut(s) 117, 284, 321
XhoI CTCGAG 1 cut(s) 353
XmaJI CCTAGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 3 cut(s) 242, 264, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.