Rorug06G0012800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002531
Physical Location & Seq
Forward (+)
1721608 .. 1723272
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0012800.1

Sequence Viewer

Length: 1665 bp
ATGTCTTCTCTCCAACCAACATTCTCTTCCAATTCCAGTTCAAACTTCAATGAGCTTCAATGGGTGATTCAAATCCAAAAATTCCTAGAGGAAGAGTTCGAGCATGATATTGAAATCCCTATCTCCATTTTCAACGTCCCCAAATCCCTCATGGCTAGTGACCCGGAATCGTACACCCCTCAAGTGGTTGCGATTGGTCCTTACCATCATTGGCGTCCGGAGCTGTATGAGATGGAGAGGTACAAAGTGGCTGCAGCTAAAACAACCCAAAAGCAGCTCCAAACACTCAAATTCCAGGACCTTGTTGACCAATTGACAAGGTTCGAGCTGAGGATTCGGGCTTGTTACCACAAGTACCTGGAGTTTAATGGCGAGACTTTAGGGTGGATGATGGCTATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGCGGTCCAAGAAGGGAACACTTCGACGAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACTATGCAGGAATGAAGTCAGCGCATCATGCCATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATGCCACTATTTGTTTTGAGAGAAGTGTTGGCATTTCAGTTACCAACGTTGGAATGTGCCGACGATATGCTTCTTTCCATGTTTATGGGACTGTGCAAAGTGCTCTCCCCATTCAAGATGAATGATGAAGACATGCCAAAGATCCAAGTGTCGAGTTGCTGTCACTTGCTAGATTTTTTGTACCACATGATTACCCCCAAATTAGAATCTAGATCGTCCGAAATTGCAGAAGGCGAGGATGGTCCGGCCACACCACACGAGGGAAAGTCTTCAGATAACTGGAATTTCGTCAAACAATTTCTGGAAAAGGTAGGGAAGCTGCTATCGAAGTTGAACAAAGGCCCGATACGTCTTCTGAAAAAAATTCTAATATCTCGACCTGTAAAAGTAATACGCAAACTGCCTTGGACTATCCTCTCCAACCTTCATGGACCCGCAATTTTGAAACAACCGCTCAAGTTAATTTCCTCCCAAGACAAAGAAGCAGTCAAACCAGAAGATGATAATTCGAGCAATAGACCGCCGTTGATAGAGGAGATCACCATCCCATCTGTCTCCGAACTCTCAAAATCAGGTGTCAAATTCTTGCCCGCAAGTAGTATTTCAACCATCTCTTTCGATGCTAAAACTTGCTCATTTTACCTCCCGAGTACAAGCTTAGATGGGAACACAGAGGTGATCCTGAGAAACTTGGTGGCCTACGAGGCATCAACTGCATCGGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAACGGGATCATAGACACCGAGGAGGACGCCAAGTTGCTTAGAGAGAAAGGTATCATCTTGAACCGTTTGAAGAGTGACGAAGAAGTGGCAAAGCTGTTCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATCAAAGATGCCAACAAGTATTACAATGGTAGATGGAAGGTGAAGATGAGGAAGTCTTTGAAAACTTATGTGTTCGGTTCTTGGCAATTTCTGGCTTCGCTCGCTACCATTTTTCTCCTGCTCTTGATGACATTGGAAGCATTTTGCTCAGTCTATAGCTGCAATCGCATGTTTCATATCAACACCACTAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

554

Amino Acids

63.11

Weight (kDa)

7.97

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 531 2e-106 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1012
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 5 cut(s) 437, 993, 1010, 1079, 1149
AclI AACGTT 1 cut(s) 605
AclWI GGATC 3 cut(s) 694, 1231, 1328
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 5 cut(s) 80, 290, 841, 921, 1139
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 2 cut(s) 214, 1341
AfaI GTAC 5 cut(s) 173, 242, 356, 740, 1210
AfiI CCNNNNNNNGG 3 cut(s) 184, 531, 818
AjnI CCWGG 2 cut(s) 294, 357
AjuI GAANNNNNNNTTGG 4 cut(s) 10, 42, 1436, 1468
AleI CACNNNNGTG 1 cut(s) 1232
AluBI AGCT 9 cut(s) 55, 223, 257, 277, 328, 877, 1215, 1408, 1626
AluI AGCT 9 cut(s) 55, 223, 257, 277, 328, 877, 1215, 1408, 1626
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 368, 1117
AlwI GGATC 3 cut(s) 694, 1231, 1328
Ama87I CYCGRG 1 cut(s) 1204
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 4 cut(s) 804, 898, 1254, 1280
ApeKI GCWGC 5 cut(s) 251, 254, 274, 877, 1626
ApoI RAATTY 5 cut(s) 80, 290, 841, 921, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 1029, 1061
Asp700I GAANNNNTTC 1 cut(s) 826
AspLEI GCGC 2 cut(s) 484, 517
AspS9I GGNCC 7 cut(s) 197, 298, 439, 800, 899, 989, 1280
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 5 cut(s) 76, 553, 1090, 1246, 1519
AvaI CYCGRG 1 cut(s) 1204
AvaII GGWCC 5 cut(s) 197, 298, 439, 800, 989
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 1452
BauI CACGAG 1 cut(s) 815
BbsI GAAGAC 3 cut(s) 693, 819, 902
Bbv12I GWGCWC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 5 cut(s) 238, 266, 286, 864, 1613
BceAI ACGGC 1 cut(s) 1066
BciT130I CCWGG 2 cut(s) 296, 359
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 368, 1117
BfaI CTAG 4 cut(s) 86, 156, 728, 768
BfmI CTRYAG 2 cut(s) 252, 1621
BglI GCCNNNNNGGC 1 cut(s) 1262
BisI GCNGC 5 cut(s) 252, 255, 275, 878, 1627
BlsI GCNGC 5 cut(s) 253, 256, 276, 879, 1628
Bme1390I CCNGG 3 cut(s) 164, 296, 359
Bme18I GGWCC 5 cut(s) 197, 298, 439, 800, 989
BmeT110I CYCGRG 1 cut(s) 1204
BmgT120I GGNCC 7 cut(s) 197, 298, 439, 800, 899, 989, 1280
BmiI GGNNCC 2 cut(s) 991, 1281
BmrFI CCNGG 3 cut(s) 164, 296, 359
BmsI GCATC 7 cut(s) 391, 526, 534, 1168, 1274, 1283, 1465
BpiI GAAGAC 3 cut(s) 693, 819, 902
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 329
BpuEI CTTGAG 3 cut(s) 165, 569, 998
BpuMI CCSGG 1 cut(s) 164
BsaBI GATNNNNATC 2 cut(s) 71, 1100
BsaHI GRCGYC 2 cut(s) 214, 1341
BsaJI CCNNGG 2 cut(s) 962, 1332
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 531, 818
Bse1I ACTGG 2 cut(s) 36, 842
Bse21I CCTNAGG 1 cut(s) 530
Bse8I GATNNNNATC 2 cut(s) 71, 1100
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 2 cut(s) 296, 359
BseDI CCNNGG 2 cut(s) 962, 1332
BseGI GGATG 5 cut(s) 393, 483, 525, 802, 1101
BseJI GATNNNNATC 2 cut(s) 71, 1100
BseLI CCNNNNNNNGG 3 cut(s) 184, 531, 818
BseMII CTCAG 3 cut(s) 320, 1232, 1629
BseNI ACTGG 2 cut(s) 36, 842
BseRI GAGGAG 2 cut(s) 1106, 1349
BseSI GKGCMC 1 cut(s) 1452
BseXI GCAGC 5 cut(s) 238, 266, 286, 864, 1613
BshFI GGCC 4 cut(s) 806, 900, 1256, 1282
BsiHKAI GWGCWC 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 1204
BsiSI CCGG 3 cut(s) 164, 218, 803
BslFI GGGAC 3 cut(s) 122, 548, 660
BslI CCNNNNNNNGG 3 cut(s) 184, 531, 818
BsmAI GTCTC 2 cut(s) 368, 1117
BsmFI GGGAC 3 cut(s) 122, 548, 660
BsnI GGCC 4 cut(s) 806, 900, 1256, 1282
BsoBI CYCGRG 1 cut(s) 1204
Bsp1286I GDGCHC 2 cut(s) 663, 1452
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 5 cut(s) 699, 770, 1095, 1236, 1320
BspACI CCGC 5 cut(s) 437, 993, 1010, 1079, 1149
BspANI GGCC 4 cut(s) 806, 900, 1256, 1282
BspCNI CTCAG 3 cut(s) 321, 1233, 1628
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 991, 1281
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 3 cut(s) 694, 1231, 1328
BsrBI CCGCTC 1 cut(s) 1012
BsrI ACTGG 2 cut(s) 36, 842
BssECI CCNNGG 2 cut(s) 962, 1332
BssMI GATC 5 cut(s) 699, 770, 1095, 1236, 1320
BssNI GRCGYC 2 cut(s) 214, 1341
BssSI CACGAG 1 cut(s) 815
BssT1I CCWWGG 1 cut(s) 962
Bst2BI CACGAG 1 cut(s) 815
Bst2UI CCWGG 2 cut(s) 296, 359
Bst4CI ACNGT 2 cut(s) 651, 1379
Bst6I CTCTTC 3 cut(s) 31, 87, 1379
BstACI GRCGYC 2 cut(s) 214, 1341
BstAPI GCANNNNNTGC 1 cut(s) 1271
BstC8I GCNNGC 2 cut(s) 1149, 1569
BstDEI CTNAG 6 cut(s) 329, 530, 1216, 1241, 1352, 1615
BstF5I GGATG 5 cut(s) 393, 483, 525, 802, 1101
BstHHI GCGC 2 cut(s) 484, 517
BstKTI GATC 5 cut(s) 702, 773, 1098, 1239, 1323
BstMAI GTCTC 2 cut(s) 368, 1117
BstMBI GATC 5 cut(s) 699, 770, 1095, 1236, 1320
BstMWI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1262, 1271, 1568, 1632
BstNI CCWGG 2 cut(s) 296, 359
BstNSI RCATGY 2 cut(s) 694, 1639
BstSCI CCNGG 3 cut(s) 162, 294, 357
BstSFI CTRYAG 2 cut(s) 252, 1621
BstSLI GKGCMC 1 cut(s) 1452
BstV1I GCAGC 5 cut(s) 238, 266, 286, 864, 1613
BstV2I GAAGAC 3 cut(s) 693, 819, 902
BstX2I RGATCY 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 4 cut(s) 806, 900, 1256, 1282
BtsCI GGATG 5 cut(s) 393, 483, 525, 802, 1101
Cac8I GCNNGC 2 cut(s) 1149, 1569
CfoI GCGC 2 cut(s) 484, 517
Cfr13I GGNCC 7 cut(s) 197, 298, 439, 800, 899, 989, 1280
CseI GACGC 2 cut(s) 203, 1349
Csp6I GTAC 5 cut(s) 172, 241, 355, 739, 1209
CviAII CATG 9 cut(s) 104, 151, 521, 637, 691, 745, 986, 1420, 1636
CviQI GTAC 5 cut(s) 172, 241, 355, 739, 1209
DdeI CTNAG 6 cut(s) 329, 530, 1216, 1241, 1352, 1615
DpnI GATC 5 cut(s) 701, 772, 1097, 1238, 1322
DpnII GATC 5 cut(s) 699, 770, 1095, 1236, 1320
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 3 cut(s) 31, 87, 1379
EarI CTCTTC 3 cut(s) 31, 87, 1379
Eco130I CCWWGG 1 cut(s) 962
Eco47I GGWCC 5 cut(s) 197, 298, 439, 800, 989
Eco57I CTGAAG 1 cut(s) 813
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 1204
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 294, 357
EcoT14I CCWWGG 1 cut(s) 962
ErhI CCWWGG 1 cut(s) 962
FaeI CATG 9 cut(s) 107, 154, 524, 640, 694, 748, 989, 1423, 1639
FaqI GGGAC 3 cut(s) 122, 548, 660
FatI CATG 9 cut(s) 103, 150, 520, 636, 690, 744, 985, 1419, 1635
FauI CCCGC 2 cut(s) 1000, 1156
Fnu4HI GCNGC 5 cut(s) 252, 255, 275, 878, 1627
FokI GGATG 5 cut(s) 400, 490, 512, 809, 1088
Fsp4HI GCNGC 5 cut(s) 252, 255, 275, 878, 1627
FspBI CTAG 4 cut(s) 86, 156, 728, 768
GlaI GCGC 2 cut(s) 483, 516
GluI GCNGC 5 cut(s) 252, 255, 275, 878, 1627
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 4 cut(s) 806, 900, 1256, 1282
HapII CCGG 3 cut(s) 164, 218, 803
HgaI GACGC 2 cut(s) 203, 1349
HhaI GCGC 2 cut(s) 484, 517
Hin1I GRCGYC 2 cut(s) 214, 1341
Hin1II CATG 9 cut(s) 107, 154, 524, 640, 694, 748, 989, 1423, 1639
Hin6I GCGC 2 cut(s) 482, 515
HinP1I GCGC 2 cut(s) 482, 515
HincII GTYRAC 2 cut(s) 307, 493
HindII GTYRAC 2 cut(s) 307, 493
HindIII AAGCTT 1 cut(s) 1213
HinfI GANTC 4 cut(s) 67, 167, 334, 764
HpaII CCGG 3 cut(s) 164, 218, 803
HphI GGTGA 5 cut(s) 76, 553, 1090, 1246, 1519
Hpy166II GTNNAC 3 cut(s) 174, 307, 493
Hpy188I TCNGA 4 cut(s) 778, 832, 915, 1117
Hpy188III TCNNGA 9 cut(s) 218, 673, 768, 860, 933, 1204, 1240, 1372, 1591
Hpy8I GTNNAC 3 cut(s) 174, 307, 493
Hpy99I CGWCG 2 cut(s) 463, 623
HpyAV CCTTC 5 cut(s) 440, 782, 992, 1462, 1498
HpyCH4III ACNGT 2 cut(s) 651, 1379
HpyCH4IV ACGT 3 cut(s) 135, 605, 907
HpyCH4V TGCA 6 cut(s) 254, 500, 654, 785, 1274, 1629
HpyF10VI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1262, 1271, 1568, 1632
HpyF3I CTNAG 6 cut(s) 329, 530, 1216, 1241, 1352, 1615
HpySE526I ACGT 3 cut(s) 135, 605, 907
Hsp92I GRCGYC 2 cut(s) 214, 1341
Hsp92II CATG 9 cut(s) 107, 154, 524, 640, 694, 748, 989, 1423, 1639
HspAI GCGC 2 cut(s) 482, 515
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 5 cut(s) 699, 770, 1095, 1236, 1320
LmnI GCTCC 2 cut(s) 220, 282
Lsp1109I GCAGC 5 cut(s) 238, 266, 286, 864, 1613
LweI GCATC 7 cut(s) 391, 526, 534, 1168, 1274, 1283, 1465
MaeI CTAG 4 cut(s) 86, 156, 728, 768
MaeII ACGT 3 cut(s) 135, 605, 907
MaeIII GTNAC 5 cut(s) 158, 344, 597, 719, 1388
MalI GATC 5 cut(s) 701, 772, 1097, 1238, 1322
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 5 cut(s) 699, 770, 1095, 1236, 1320
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 663, 1452
MmeI TCCRAC 3 cut(s) 37, 588, 1002
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 826
MseI TTAA 2 cut(s) 366, 1019
MslI CAYNNNNRTG 2 cut(s) 641, 1232
MspI CCGG 3 cut(s) 164, 218, 803
MspR9I CCNGG 3 cut(s) 164, 296, 359
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 2 cut(s) 296, 359
MwoI GCNNNNNNNGC 7 cut(s) 220, 401, 521, 1262, 1271, 1568, 1632
NciI CCSGG 1 cut(s) 164
NdeII GATC 5 cut(s) 699, 770, 1095, 1236, 1320
NlaIII CATG 9 cut(s) 107, 154, 524, 640, 694, 748, 989, 1423, 1639
NlaIV GGNNCC 2 cut(s) 991, 1281
NmuCI GTSAC 3 cut(s) 158, 719, 1388
NspI RCATGY 2 cut(s) 694, 1639
OliI CACNNNNGTG 1 cut(s) 1232
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 4 cut(s) 67, 167, 334, 764
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 5 cut(s) 253, 256, 276, 879, 1628
PpuMI RGGWCCY 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 294, 357
PspGI CCWGG 2 cut(s) 294, 357
PspN4I GGNNCC 2 cut(s) 991, 1281
PspPI GGNCC 7 cut(s) 197, 298, 439, 800, 899, 989, 1280
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 699
RsaI GTAC 5 cut(s) 173, 242, 356, 740, 1210
RsaNI GTAC 5 cut(s) 172, 241, 355, 739, 1209
RseI CAYNNNNRTG 2 cut(s) 641, 1232
SaqAI TTAA 2 cut(s) 366, 1019
SatI GCNGC 5 cut(s) 252, 255, 275, 878, 1627
Sau3AI GATC 5 cut(s) 699, 770, 1095, 1236, 1320
Sau96I GGNCC 7 cut(s) 197, 298, 439, 800, 899, 989, 1280
ScrFI CCNGG 3 cut(s) 164, 296, 359
SduI GDGCHC 2 cut(s) 663, 1452
SfaNI GCATC 7 cut(s) 391, 526, 534, 1168, 1274, 1283, 1465
SfcI CTRYAG 2 cut(s) 252, 1621
SinI GGWCC 5 cut(s) 197, 298, 439, 800, 989
SmiMI CAYNNNNRTG 2 cut(s) 641, 1232
SmlI CTYRAG 3 cut(s) 180, 548, 1013
SmoI CTYRAG 3 cut(s) 180, 548, 1013
SsiI CCGC 5 cut(s) 437, 993, 1010, 1079, 1149
SspMI CTAG 4 cut(s) 86, 156, 728, 768
StyD4I CCNGG 3 cut(s) 162, 294, 357
StyI CCWWGG 1 cut(s) 962
TaaI ACNGT 2 cut(s) 651, 1379
TaiI ACGT 3 cut(s) 138, 608, 910
TaqI TCGA 9 cut(s) 99, 324, 417, 458, 710, 884, 934, 1067, 1176
TatI WGTACW 1 cut(s) 1208
TfiI GAWTC 4 cut(s) 67, 167, 334, 764
Tru1I TTAA 2 cut(s) 366, 1019
Tru9I TTAA 2 cut(s) 366, 1019
TseFI GTSAC 3 cut(s) 158, 719, 1388
TseI GCWGC 5 cut(s) 251, 254, 274, 877, 1626
Tsp45I GTSAC 3 cut(s) 158, 719, 1388
TspDTI ATGAA 6 cut(s) 521, 692, 699, 974, 1328, 1631
VpaK11BI GGWCC 5 cut(s) 197, 298, 439, 800, 989
XapI RAATTY 5 cut(s) 80, 290, 841, 921, 1139
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 2 cut(s) 694, 1639
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 826
XspI CTAG 4 cut(s) 86, 156, 728, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.