Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8117028.1

Orthogroup ID

OG0002986

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 616

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8117028.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

gatgatgatgatgattcagaattctttgatgttggtgatatagagatctcagagccaaatttcgtgtttaaatttgagtaccagacttgggaaatattaaaaacaccggaaaaagcggatgtaatcggtgattatgtagcttttcaggcccaaaagaatactagtagtagttgcttcattgaagaagcagaaaatgggtctgctcacaaatcaaattgtggttctatcgaagcaactgatgttgatgaaggaaaaagtgctcagggttttacagagggttttgaccaattggttagagaagtacaagttcatgaggaaaaaggtactgatcagggttttagagatggtgcatttgaggaagaggaggtagagaagaaatcagtgattgaagaagattctgtttcggacgacgaagaaggatcggagagtcaggaagaagtagatgttaataatgaagaaatgtctcattcagatgaggaaagtgatagtactggtgatgagaaactggctactagtcatgaagatgagttggtttcggaagagaactttgttagttcggaatctgattctgatttgatttgctcaagtctagatgatgatgaagtaggtgctttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

205

Amino Acids

22.72

Weight (kDa)

4.05

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39785 AT5G39785 AT5G39785 AT5G39785 AT5G39785
fragaria_vesca	FvH4_6g01220 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640
malus_domestica	MD01G1191200.v1.1 MD09G1050700.v1.1 MD17G1050800.v1.1
prunus_persica	Prupe.3G268100_v2.0.a1
pyrus_communis	pycom111g04180 pycom17g04570
rosa_chinensis	RchiOBHm_Chr2g0168591 RchiOBHm_Chr3g0448731
rosa_laevigata	RLG00000021786 RLG00000025876
rosa_multiflora	Rmu_co8117028.1_g000001 Rmu_sc0002416.1_g000018 Rmu_sc0017810.1_g000001 Rmu_sc0027086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082920 Rroxscaffold_6G00426990
rosa_rugosa	Rorug02G0534000 Rorug02G0616300
rosa_samantha	Rh2AG604300 Rh2BG617300 Rh2CG585600 Rh2DG627800 Rh3AG014500 Rh3BG014300 Rh3CG013300 Rh3DG014900
rosa_wichuraiana	Rw2G050110 Rw3G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	3 cut(s)	20, 58, 71
AfaI	GTAC	4 cut(s)	80, 303, 325, 490
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	182, 389
AhlI	ACTAGT	2 cut(s)	161, 512
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	427
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	20, 58, 71
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	47, 140, 506
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	468
BcuI	ACTAGT	2 cut(s)	161, 512
BfaI	CTAG	3 cut(s)	162, 513, 590
BglII	AGATCT	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	496, 510
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	63, 275
BseNI	ACTGG	2 cut(s)	496, 510
BseRI	GAGGAG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	45, 328, 419
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	62, 274
BspHI	TCATGA	2 cut(s)	310, 517
BspPI	GGATC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	496, 510
BssMI	GATC	3 cut(s)	45, 328, 419
Bst6I	CTCTTC	2 cut(s)	354, 534
BstDEI	CTNAG	2 cut(s)	49, 261
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	48, 331, 422
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	45, 328, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	387
CciI	TCATGA	2 cut(s)	310, 517
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	79, 302, 324, 489
CviAII	CATG	2 cut(s)	311, 518
CviJI	RGCY	4 cut(s)	55, 140, 149, 509
CviKI_1	RGCY	4 cut(s)	55, 140, 149, 509
CviQI	GTAC	4 cut(s)	79, 302, 324, 489
DdeI	CTNAG	2 cut(s)	49, 261
DpnI	GATC	3 cut(s)	47, 330, 421
DpnII	GATC	3 cut(s)	45, 328, 419
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	354, 534
EarI	CTCTTC	2 cut(s)	354, 534
EcoRI	GAATTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	314, 521
FaiI	YATR	4 cut(s)	41, 135, 312, 519
FatI	CATG	2 cut(s)	310, 517
FbaI	TGATCA	1 cut(s)	328
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	3 cut(s)	162, 513, 590
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	2 cut(s)	314, 521
HinfI	GANTC	5 cut(s)	14, 395, 427, 560, 566
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	3 cut(s)	47, 140, 506
Hpy188I	TCNGA	9 cut(s)	19, 52, 406, 424, 472, 538, 559, 565, 571
Hpy188III	TCNNGA	4 cut(s)	311, 431, 518, 590
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	2 cut(s)	242, 410
HpyCH4V	TGCA	1 cut(s)	350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	49, 261
Hsp92II	CATG	2 cut(s)	314, 521
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	45, 328, 419
LpnPI	CCDG	8 cut(s)	95, 120, 131, 248, 317, 416, 477, 491
MaeI	CTAG	3 cut(s)	162, 513, 590
MalI	GATC	3 cut(s)	47, 330, 421
MboI	GATC	3 cut(s)	45, 328, 419
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	5 cut(s)	20, 58, 71, 214, 287
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	6 cut(s)	268, 307, 349, 355, 358, 469
MseI	TTAA	3 cut(s)	69, 98, 447
MslI	CAYNNNNRTG	2 cut(s)	471, 522
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	3 cut(s)	45, 328, 419
NlaIII	CATG	2 cut(s)	314, 521
PagI	TCATGA	2 cut(s)	310, 517
PfeI	GAWTC	4 cut(s)	14, 395, 560, 566
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	4 cut(s)	80, 303, 325, 490
RsaNI	GTAC	4 cut(s)	79, 302, 324, 489
RseI	CAYNNNNRTG	2 cut(s)	471, 522
SaqAI	TTAA	3 cut(s)	69, 98, 447
Sau3AI	GATC	3 cut(s)	45, 328, 419
Sau96I	GGNCC	1 cut(s)	148
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	4 cut(s)	142, 325, 369, 610
SmiMI	CAYNNNNRTG	2 cut(s)	471, 522
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SpeI	ACTAGT	2 cut(s)	161, 512
Sse9I	AATT	5 cut(s)	20, 58, 71, 214, 287
SsiI	CCGC	1 cut(s)	116
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	3 cut(s)	162, 513, 590
TaqI	TCGA	1 cut(s)	228
TasI	AATT	5 cut(s)	20, 58, 71, 214, 287
TatI	WGTACW	2 cut(s)	301, 488
TfiI	GAWTC	4 cut(s)	14, 395, 560, 566
Tru1I	TTAA	3 cut(s)	69, 98, 447
Tru9I	TTAA	3 cut(s)	69, 98, 447
TscAI	CASTG	1 cut(s)	387
TspDTI	ATGAA	6 cut(s)	166, 261, 299, 468, 534, 615
TspRI	CASTG	1 cut(s)	387
XapI	RAATTY	3 cut(s)	20, 58, 71
XbaI	TCTAGA	1 cut(s)	589
XspI	CTAG	3 cut(s)	162, 513, 590
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.