Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027086.1

Orthogroup ID

OG0002986

Physical Location & Seq

Genomic Coordinates Forward (+)

3959 .. 6046

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027086.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

atgattgctcagttttccgactccgttgtgttcagattcttcagcacactcttcgtcgaagaagagatttctccgatgaggaattccggtttctctagcactgtaccggagagagctgaatctgagattcggaaaagttacgaagcagatgatgatgatgatgattcagaattctttgatgttggtgatatagagatctcagagccaaatttcgtgtttaaatttgagtaccagacttgggaaatattaaaaacaccggaaaaagcggatgtaatcggtgattatgtagcttttcaggcccaaaagaatactagtagtagttgcttcattgaagaagcagaaaatgggtctgctcacaaatcaaattgtggttctatcgaagcaactgatgttgatgaaggaaaaagtgctcagggttttacagagggttttgaccaattggttagagaagtacaagttcatgaggaaaaaggtactgatcagggttttagagatggtgcatttgaggaagaggaggtagagaagaaatcagtgattgaagaagattctgtttcggacgacgaagaaggatcggagagtcaggaagaagtagatgttaataatgaagaaatgtctcattcagatgaggaaagtgatagtactggtgatgagaaactggctactagtcatgaagatgagttggtttcggaagagaactttgttagttcggaatctgattctgatttgatttgctcaagtctagatgatgatgaagtaggtgctttggaagacattggattgcacgagcctgatggttttgatgaagaagatgatgatataatggaacaatttagagaactagaagagttgtgtacgactgatggtcaaaactcgaaagggtccgaacctaaaggagaagaaaagctagtggatgattataatggttccgaggattcagacacattggatgttttgtgggaacaccaagagttgatagaccagttgaaaatggatctcaagacagtcagagctacaactggtctgcctacaatttttgaagaatccgagtctctggatatggatgacgtgaagccactcaagattgatgaaaaataccaacacggagatagaatgagggtgcttcacaagttctacaagagttacaggactcgaatgcgcaagttggatattttgagttaccagaagtcatatgcaataggtgtcctgcagtctaagaatccacttagaccgttttcgagctacaaatcctcaactccagcaatcaagtcctttctttccaactggaggctatgtagacccaaaatagattgtgatccaattgttaagttcattaaggatgtgcatagtgacttggaattggtctatgtagggcagttgtgcctttcatgggagttccttaaatggcaatatgagaaggccttggagctattggaatctgcccctaatcaaatacattcatacaatgaagttgcagaagaattgcaacattttcaagtgctcctgcaaagatttatagaggatgaacattttcaaggggcaaggatcgaaaactatgttaaaaatcgatgtgctatgcataagcttctacaagttccagtaatcagagaggacaaatcggaggaaggaaagaaagaggatgcaattaccactgacagtcttgtcgagatgttgagagaatcgataaggaccatttggcgattcattcgagctgataaaaatgccaacataaccagcgcttgtcgaaaaagatcacttgatggagattgcttggatccagagcttttagtggaagttcaagcagatcttcggaagaaagagaggaagcttaaagagctattgaggagtgagaaccggatcataaagagattccaaaagcatgaagaaggaggagaagaagaggaagacagcggagatcatggtcaacataacttcttttctcaagtggacatcagattagtttcaagggttttgaacatgtcaactataacacaagagcaactagtgtggtgtcaaagtaagttgagcgagatacactttgtgaagcgcaagattcatgtagatccctctttcttgttgtttccatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

695

Amino Acids

80.06

Weight (kDa)

4.51

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39785 AT5G39785 AT5G39785 AT5G39785 AT5G39785
fragaria_vesca	FvH4_6g01220 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640
malus_domestica	MD01G1191200.v1.1 MD09G1050700.v1.1 MD17G1050800.v1.1
prunus_persica	Prupe.3G268100_v2.0.a1
pyrus_communis	pycom111g04180 pycom17g04570
rosa_chinensis	RchiOBHm_Chr2g0168591 RchiOBHm_Chr3g0448731
rosa_laevigata	RLG00000021786 RLG00000025876
rosa_multiflora	Rmu_co8117028.1_g000001 Rmu_sc0002416.1_g000018 Rmu_sc0017810.1_g000001 Rmu_sc0027086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082920 Rroxscaffold_6G00426990
rosa_rugosa	Rorug02G0534000 Rorug02G0616300
rosa_samantha	Rh2AG604300 Rh2BG617300 Rh2CG585600 Rh2DG627800 Rh3AG014500 Rh3BG014300 Rh3CG013300 Rh3DG014900
rosa_wichuraiana	Rw2G050110 Rw3G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AasI	GACNNNNNNGTC	1 cut(s)	1658
Acc16I	TGCGCA	1 cut(s)	1157
AccI	GTMKAC	1 cut(s)	1294
AciI	CCGC	2 cut(s)	266, 1908
AclWI	GGATC	8 cut(s)	577, 999, 1307, 1550, 1766, 1779, 1862, 2054
AcsI	RAATTY	4 cut(s)	82, 170, 208, 221
AcuI	CTGAAG	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	2038
AfaI	GTAC	6 cut(s)	105, 230, 453, 475, 640, 853
AfeI	AGCGCT	1 cut(s)	1735
AfiI	CCNNNNNNNGG	3 cut(s)	238, 1284, 1387
AflIII	ACRYGT	1 cut(s)	1974
AgsI	TTSAA	9 cut(s)	332, 539, 985, 1037, 1493, 1532, 1796, 1962, 1972
AhdI	GACNNNNNGTC	1 cut(s)	861
AhlI	ACTAGT	3 cut(s)	311, 662, 1999
AjiI	CACGTC	1 cut(s)	1066
Alw21I	GWGCWC	2 cut(s)	412, 1500
Alw26I	GTCTC	2 cut(s)	618, 1053
AlwI	GGATC	8 cut(s)	577, 999, 1307, 1550, 1766, 1779, 1862, 2054
Aor51HI	AGCGCT	1 cut(s)	1735
AoxI	GGCC	2 cut(s)	297, 1416
ApoI	RAATTY	4 cut(s)	82, 170, 208, 221
Asp700I	GAANNNNTTC	1 cut(s)	1527
AspLEI	GCGC	3 cut(s)	1158, 1736, 2046
AspS9I	GGNCC	3 cut(s)	298, 879, 1686
AsuHPI	GGTGA	3 cut(s)	197, 290, 656
AvaII	GGWCC	2 cut(s)	879, 1686
BamHI	GGATCC	1 cut(s)	1771
BauI	CACGAG	1 cut(s)	782
BbsI	GAAGAC	2 cut(s)	774, 1908
Bbv12I	GWGCWC	2 cut(s)	412, 1500
BccI	CCATC	4 cut(s)	488, 785, 854, 1751
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	2 cut(s)	618, 1053
BcuI	ACTAGT	3 cut(s)	311, 662, 1999
BfaI	CTAG	7 cut(s)	96, 312, 663, 740, 839, 905, 2000
BfmI	CTRYAG	1 cut(s)	1205
BfoI	RGCGCY	1 cut(s)	1737
BglII	AGATCT	2 cut(s)	195, 1801
BmcAI	AGTACT	1 cut(s)	640
Bme18I	GGWCC	2 cut(s)	879, 1686
BmeRI	GACNNNNNGTC	1 cut(s)	861
BmgBI	CACGTC	1 cut(s)	1066
BmgT120I	GGNCC	3 cut(s)	298, 879, 1686
BmiI	GGNNCC	3 cut(s)	880, 925, 1773
BmsI	GCATC	1 cut(s)	1627
BpiI	GAAGAC	2 cut(s)	774, 1908
BpmI	CTGGAG	2 cut(s)	1239, 1303
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	4 cut(s)	718, 980, 1061, 1923
Bsa29I	ATCGAT	2 cut(s)	1564, 1679
BsaBI	GATNNNNATC	1 cut(s)	1311
BsaJI	CCNNGG	2 cut(s)	927, 1419
BsaWI	WCCGGW	4 cut(s)	86, 106, 256, 1851
BsaXI	ACNNNNNCTCC	2 cut(s)	1276, 1306
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 1284, 1387
Bse1I	ACTGG	6 cut(s)	646, 660, 979, 1021, 1286, 1595
Bse8I	GATNNNNATC	1 cut(s)	1311
BseCI	ATCGAT	2 cut(s)	1564, 1679
BseDI	CCNNGG	2 cut(s)	927, 1419
BseGI	GGATG	7 cut(s)	274, 916, 952, 1066, 1342, 1525, 1642
BseJI	GATNNNNATC	1 cut(s)	1311
BseLI	CCNNNNNNNGG	3 cut(s)	238, 1284, 1387
BseMII	CTCAG	4 cut(s)	23, 114, 213, 425
BseNI	ACTGG	6 cut(s)	646, 660, 979, 1021, 1286, 1595
BseRI	GAGGAG	3 cut(s)	527, 1855, 1902
BshFI	GGCC	2 cut(s)	299, 1418
BshVI	ATCGAT	2 cut(s)	1564, 1679
BsiHKAI	GWGCWC	2 cut(s)	412, 1500
BsiSI	CCGG	4 cut(s)	87, 107, 257, 1852
BslI	CCNNNNNNNGG	3 cut(s)	238, 1284, 1387
BsmAI	GTCTC	2 cut(s)	618, 1053
BsmI	GAATGC	1 cut(s)	1158
BsnI	GGCC	2 cut(s)	299, 1418
Bsp1286I	GDGCHC	2 cut(s)	412, 1500
BspACI	CCGC	2 cut(s)	266, 1908
BspANI	GGCC	2 cut(s)	299, 1418
BspCNI	CTCAG	4 cut(s)	22, 115, 212, 424
BspDI	ATCGAT	2 cut(s)	1564, 1679
BspHI	TCATGA	2 cut(s)	460, 667
BspLI	GGNNCC	3 cut(s)	880, 925, 1773
BspMAI	CTGCAG	1 cut(s)	1209
BspPI	GGATC	8 cut(s)	577, 999, 1307, 1550, 1766, 1779, 1862, 2054
BsrI	ACTGG	6 cut(s)	646, 660, 979, 1021, 1286, 1595
BssECI	CCNNGG	2 cut(s)	927, 1419
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	1 cut(s)	1419
Bst2BI	CACGAG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	103, 1003, 1230, 1655
Bst6I	CTCTTC	6 cut(s)	56, 57, 504, 684, 837, 1890
BstDEI	CTNAG	6 cut(s)	9, 123, 199, 411, 1212, 1223
BstF5I	GGATG	7 cut(s)	274, 916, 952, 1066, 1342, 1525, 1642
BstH2I	RGCGCY	1 cut(s)	1737
BstHHI	GCGC	3 cut(s)	1158, 1736, 2046
BstMAI	GTCTC	2 cut(s)	618, 1053
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 1831
BstNSI	RCATGY	1 cut(s)	1978
BstSFI	CTRYAG	1 cut(s)	1205
BstV2I	GAAGAC	2 cut(s)	774, 1908
BstX2I	RGATCY	5 cut(s)	195, 991, 1771, 1801, 2059
BstYI	RGATCY	5 cut(s)	195, 991, 1771, 1801, 2059
Bsu15I	ATCGAT	2 cut(s)	1564, 1679
BsuRI	GGCC	2 cut(s)	299, 1418
BsuTUI	ATCGAT	2 cut(s)	1564, 1679
BtrI	CACGTC	1 cut(s)	1066
BtsCI	GGATG	7 cut(s)	274, 916, 952, 1066, 1342, 1525, 1642
BtsIMutI	CAGTG	3 cut(s)	99, 537, 1647
CciI	TCATGA	2 cut(s)	460, 667
CfoI	GCGC	3 cut(s)	1158, 1736, 2046
Cfr13I	GGNCC	3 cut(s)	298, 879, 1686
ClaI	ATCGAT	2 cut(s)	1564, 1679
Csp6I	GTAC	6 cut(s)	104, 229, 452, 474, 639, 852
CspCI	CAANNNNNGTGG	2 cut(s)	1985, 2020
CviAII	CATG	8 cut(s)	461, 668, 1386, 1877, 1916, 1975, 2054, 2082
CviQI	GTAC	6 cut(s)	104, 229, 452, 474, 639, 852
DdeI	CTNAG	6 cut(s)	9, 123, 199, 411, 1212, 1223
DraI	TTTAAA	1 cut(s)	220
DraIII	CACNNNGTG	1 cut(s)	2038
DrdI	GACNNNNNNGTC	1 cut(s)	1658
DriI	GACNNNNNGTC	1 cut(s)	861
DseDI	GACNNNNNNGTC	1 cut(s)	1658
Eam1104I	CTCTTC	6 cut(s)	56, 57, 504, 684, 837, 1890
Eam1105I	GACNNNNNGTC	1 cut(s)	861
EarI	CTCTTC	6 cut(s)	56, 57, 504, 684, 837, 1890
Eco130I	CCWWGG	1 cut(s)	1419
Eco147I	AGGCCT	1 cut(s)	1418
Eco47I	GGWCC	2 cut(s)	879, 1686
Eco47III	AGCGCT	1 cut(s)	1735
Eco57I	CTGAAG	1 cut(s)	25
EcoRI	GAATTC	2 cut(s)	82, 170
EcoT14I	CCWWGG	1 cut(s)	1419
EcoT22I	ATGCAT	1 cut(s)	1578
ErhI	CCWWGG	1 cut(s)	1419
FaeI	CATG	8 cut(s)	464, 671, 1389, 1880, 1919, 1978, 2057, 2085
FalI	AAGNNNNNCTT	2 cut(s)	1788, 1820
FatI	CATG	8 cut(s)	460, 667, 1385, 1876, 1915, 1974, 2053, 2081
FauNDI	CATATG	1 cut(s)	1189
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	1294
FokI	GGATG	7 cut(s)	281, 923, 959, 1073, 1349, 1532, 1649
FspBI	CTAG	7 cut(s)	96, 312, 663, 740, 839, 905, 2000
FspI	TGCGCA	1 cut(s)	1157
GlaI	GCGC	3 cut(s)	1157, 1735, 2045
GsuI	CTGGAG	2 cut(s)	1239, 1303
HaeII	RGCGCY	1 cut(s)	1737
HaeIII	GGCC	2 cut(s)	299, 1418
HapII	CCGG	4 cut(s)	87, 107, 257, 1852
HhaI	GCGC	3 cut(s)	1158, 1736, 2046
Hin1II	CATG	8 cut(s)	464, 671, 1389, 1880, 1919, 1978, 2057, 2085
Hin6I	GCGC	3 cut(s)	1156, 1734, 2044
HinP1I	GCGC	3 cut(s)	1156, 1734, 2044
HincII	GTYRAC	2 cut(s)	1922, 1980
HindII	GTYRAC	2 cut(s)	1922, 1980
HindIII	AAGCTT	2 cut(s)	1580, 1823
HpaII	CCGG	4 cut(s)	87, 107, 257, 1852
HphI	GGTGA	3 cut(s)	197, 290, 656
Hpy166II	GTNNAC	5 cut(s)	852, 1295, 1922, 1945, 1980
Hpy188III	TCNNGA	9 cut(s)	461, 581, 668, 740, 997, 1052, 1078, 1663, 1775
Hpy8I	GTNNAC	5 cut(s)	852, 1295, 1922, 1945, 1980
Hpy99I	CGWCG	2 cut(s)	59, 563
HpyAV	CCTTC	5 cut(s)	392, 560, 1408, 1616, 1877
HpyCH4III	ACNGT	4 cut(s)	103, 1003, 1230, 1655
HpyCH4IV	ACGT	1 cut(s)	1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 1831
HpyF3I	CTNAG	6 cut(s)	9, 123, 199, 411, 1212, 1223
HpySE526I	ACGT	1 cut(s)	1065
Hsp92II	CATG	8 cut(s)	464, 671, 1389, 1880, 1919, 1978, 2057, 2085
HspAI	GCGC	3 cut(s)	1156, 1734, 2044
Ksp22I	TGATCA	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	1423, 1503
LweI	GCATC	1 cut(s)	1627
MaeI	CTAG	7 cut(s)	96, 312, 663, 740, 839, 905, 2000
MaeII	ACGT	1 cut(s)	1065
MaeIII	GTNAC	4 cut(s)	137, 1139, 1175, 1346
MfeI	CAATTG	2 cut(s)	437, 1317
MflI	RGATCY	5 cut(s)	195, 991, 1771, 1801, 2059
MhlI	GDGCHC	2 cut(s)	412, 1500
MlyI	GAGTC	4 cut(s)	14, 586, 1055, 1141
MmeI	TCCRAC	3 cut(s)	42, 1143, 1302
Mph1103I	ATGCAT	1 cut(s)	1578
MroXI	GAANNNNTTC	1 cut(s)	1527
MseI	TTAA	9 cut(s)	219, 248, 597, 1323, 1332, 1398, 1557, 1827, 2086
MslI	CAYNNNNRTG	2 cut(s)	621, 672
MspA1I	CMGCKG	1 cut(s)	1908
MspI	CCGG	4 cut(s)	87, 107, 257, 1852
MunI	CAATTG	2 cut(s)	437, 1317
Mva1269I	GAATGC	1 cut(s)	1158
MwoI	GCNNNNNNNGC	2 cut(s)	296, 1831
NdeI	CATATG	1 cut(s)	1189
NlaIII	CATG	8 cut(s)	464, 671, 1389, 1880, 1919, 1978, 2057, 2085
NlaIV	GGNNCC	3 cut(s)	880, 925, 1773
NmuCI	GTSAC	1 cut(s)	1346
NsbI	TGCGCA	1 cut(s)	1157
NsiI	ATGCAT	1 cut(s)	1578
NspI	RCATGY	1 cut(s)	1978
PagI	TCATGA	2 cut(s)	460, 667
PceI	AGGCCT	1 cut(s)	1418
PciI	ACATGT	1 cut(s)	1974
PctI	GAATGC	1 cut(s)	1158
PdmI	GAANNNNTTC	1 cut(s)	1527
PleI	GAGTC	4 cut(s)	14, 585, 1054, 1141
PpsI	GAGTC	4 cut(s)	14, 585, 1054, 1141
PscI	ACATGT	1 cut(s)	1974
PsiI	TTATAA	1 cut(s)	918
PspN4I	GGNNCC	3 cut(s)	880, 925, 1773
PspPI	GGNCC	3 cut(s)	298, 879, 1686
PstI	CTGCAG	1 cut(s)	1209
PsuI	RGATCY	5 cut(s)	195, 991, 1771, 1801, 2059
RsaI	GTAC	6 cut(s)	105, 230, 453, 475, 640, 853
RsaNI	GTAC	6 cut(s)	104, 229, 452, 474, 639, 852
RseI	CAYNNNNRTG	2 cut(s)	621, 672
SaqAI	TTAA	9 cut(s)	219, 248, 597, 1323, 1332, 1398, 1557, 1827, 2086
Sau96I	GGNCC	3 cut(s)	298, 879, 1686
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	4 cut(s)	14, 586, 1055, 1141
SduI	GDGCHC	2 cut(s)	412, 1500
SfaNI	GCATC	1 cut(s)	1627
SfcI	CTRYAG	1 cut(s)	1205
SinI	GGWCC	2 cut(s)	879, 1686
SmiMI	CAYNNNNRTG	2 cut(s)	621, 672
SmlI	CTYRAG	4 cut(s)	733, 995, 1076, 1938
SmoI	CTYRAG	4 cut(s)	733, 995, 1076, 1938
SpeI	ACTAGT	3 cut(s)	311, 662, 1999
SseBI	AGGCCT	1 cut(s)	1418
SsiI	CCGC	2 cut(s)	266, 1908
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	7 cut(s)	96, 312, 663, 740, 839, 905, 2000
StuI	AGGCCT	1 cut(s)	1418
StyI	CCWWGG	1 cut(s)	1419
TaaI	ACNGT	4 cut(s)	103, 1003, 1230, 1655
TaiI	ACGT	1 cut(s)	1068
TatI	WGTACW	2 cut(s)	451, 638
Tru1I	TTAA	9 cut(s)	219, 248, 597, 1323, 1332, 1398, 1557, 1827, 2086
Tru9I	TTAA	9 cut(s)	219, 248, 597, 1323, 1332, 1398, 1557, 1827, 2086
TscAI	CASTG	3 cut(s)	106, 537, 1654
TseFI	GTSAC	1 cut(s)	1346
Tsp45I	GTSAC	1 cut(s)	1346
TspGWI	ACGGA	2 cut(s)	13, 1116
TspRI	CASTG	3 cut(s)	106, 537, 1654
VpaK11BI	GGWCC	2 cut(s)	879, 1686
XapI	RAATTY	4 cut(s)	82, 170, 208, 221
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	1 cut(s)	1978
XmiI	GTMKAC	1 cut(s)	1294
XmnI	GAANNNNTTC	1 cut(s)	1527
XspI	CTAG	7 cut(s)	96, 312, 663, 740, 839, 905, 2000
ZrmI	AGTACT	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	1578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.