Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017810.1

Orthogroup ID

OG0002986

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1403

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1346 bp

atgatgatgaagtaggtgctttggaagacattggattgcacgagcctgatggttttgatgaagaagatgatgatataatggaacaatttagagaactagaagagttgtgtacgactgatggtcaaaactcgaaagggtccgaacctaaaggagaagaaaagctagtggatgattataatggttccgaggattcagacacattggatgttttgtgggaacaccaagagttgatagaccagttgaaaatggagctcaagacagtcagagctacaactggtctgcctacaatttttgaagaatccgagtctctggatatggatgacttgaagccactcaagattgatgaaaaataccaacacggagatagaatgagggtgcttcacaagttctacaagaggtacaggactcgaatgcgcaagttggatattttgagttaccagaagtcatatgcaataggtgtcctgcagtctaagaatccacttagaccgttttcgagctacaaatcctcaactccagcaatcaagtcctttctttccaactggaggctatgtagacccaaaatagattgtgatccaattgttaagttcattaaggatgtgcatagtgacttggaattggtctatgtagggcagttgtgcctttcatgggagttccttaaatggcaatatgagaaggccttggagctattggaatctgcccctaatcaaatacattcatacaatgaagttgcagaagaattgcaacattttcaagtgctcctgcaaagatttatagaggatgaacattttcaaggggcaaggatcgaaaactatgttaaaaatcgatgtgctatgcataagcttctacaagttccagtaatcagagaggacaaatcggaggaaggaaagaaagaggatgcaattaccactgacagtcttgtcgagatgttgagagaatcgataaggaccatttggcgattcattcgagctgataaaaatgccaacataaccagcgcttgtcgaaaaagatcacttgatggagattgcttggatccagagcttttagtggaagttcaagcagatcttcggaagaaagagaggaagcttaaagagctattgaggagtgagaaccggatcataaagagattccaaaagcatgaagaaggaggagaagaagaggaagacagcggagatcatggtcaacataacttcttttctcaagtggacatcagattagtttcaagggttttgaacatgtcaactataacacaagagcaactagtgtggtgtcaaagtaagttgagcgagatacactttgtgaagcgcaagattcatgtagatccctctttcttgttgtttccatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

447

Amino Acids

52.42

Weight (kDa)

5.16

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39785 AT5G39785 AT5G39785 AT5G39785 AT5G39785
fragaria_vesca	FvH4_6g01220 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640 FvH4_6g48640
malus_domestica	MD01G1191200.v1.1 MD09G1050700.v1.1 MD17G1050800.v1.1
prunus_persica	Prupe.3G268100_v2.0.a1
pyrus_communis	pycom111g04180 pycom17g04570
rosa_chinensis	RchiOBHm_Chr2g0168591 RchiOBHm_Chr3g0448731
rosa_laevigata	RLG00000021786 RLG00000025876
rosa_multiflora	Rmu_co8117028.1_g000001 Rmu_sc0002416.1_g000018 Rmu_sc0017810.1_g000001 Rmu_sc0027086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082920 Rroxscaffold_6G00426990
rosa_rugosa	Rorug02G0534000 Rorug02G0616300
rosa_samantha	Rh2AG604300 Rh2BG617300 Rh2CG585600 Rh2DG627800 Rh3AG014500 Rh3BG014300 Rh3CG013300 Rh3DG014900
rosa_wichuraiana	Rw2G050110 Rw3G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AasI	GACNNNNNNGTC	1 cut(s)	916
Acc16I	TGCGCA	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	1 cut(s)	1166
AclWI	GGATC	6 cut(s)	565, 808, 1024, 1037, 1120, 1312
AdeI	CACNNNGTG	1 cut(s)	1296
AfaI	GTAC	2 cut(s)	111, 400
AfeI	AGCGCT	1 cut(s)	993
AfiI	CCNNNNNNNGG	2 cut(s)	542, 645
AflIII	ACRYGT	1 cut(s)	1232
AgsI	TTSAA	8 cut(s)	243, 295, 327, 751, 790, 1054, 1220, 1230
AhdI	GACNNNNNGTC	1 cut(s)	119
AhlI	ACTAGT	1 cut(s)	1257
Alw21I	GWGCWC	2 cut(s)	254, 758
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	6 cut(s)	565, 808, 1024, 1037, 1120, 1312
Aor51HI	AGCGCT	1 cut(s)	993
AoxI	GGCC	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	785
AspLEI	GCGC	3 cut(s)	416, 994, 1304
AspS9I	GGNCC	2 cut(s)	137, 944
AvaII	GGWCC	2 cut(s)	137, 944
BamHI	GGATCC	1 cut(s)	1029
BanII	GRGCYC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	40
BbsI	GAAGAC	2 cut(s)	32, 1166
Bbv12I	GWGCWC	2 cut(s)	254, 758
BccI	CCATC	3 cut(s)	43, 112, 1009
BcoDI	GTCTC	1 cut(s)	311
BcuI	ACTAGT	1 cut(s)	1257
BfaI	CTAG	3 cut(s)	97, 163, 1258
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	995
BglII	AGATCT	1 cut(s)	1059
Bme18I	GGWCC	2 cut(s)	137, 944
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	137, 944
BmiI	GGNNCC	3 cut(s)	138, 183, 1031
BmsI	GCATC	1 cut(s)	885
BpiI	GAAGAC	2 cut(s)	32, 1166
BpmI	CTGGAG	2 cut(s)	497, 561
BpuEI	CTTGAG	3 cut(s)	238, 319, 1181
Bsa29I	ATCGAT	2 cut(s)	822, 937
BsaBI	GATNNNNATC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	185, 677
BsaWI	WCCGGW	1 cut(s)	1109
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 645
Bse1I	ACTGG	4 cut(s)	237, 279, 544, 853
Bse8I	GATNNNNATC	1 cut(s)	569
BseCI	ATCGAT	2 cut(s)	822, 937
BseDI	CCNNGG	2 cut(s)	185, 677
BseGI	GGATG	6 cut(s)	174, 210, 324, 600, 783, 900
BseJI	GATNNNNATC	1 cut(s)	569
BseLI	CCNNNNNNNGG	2 cut(s)	542, 645
BseNI	ACTGG	4 cut(s)	237, 279, 544, 853
BseRI	GAGGAG	2 cut(s)	1113, 1160
BshFI	GGCC	1 cut(s)	676
BshVI	ATCGAT	2 cut(s)	822, 937
BsiHKAI	GWGCWC	2 cut(s)	254, 758
BsiSI	CCGG	1 cut(s)	1110
BslI	CCNNNNNNNGG	2 cut(s)	542, 645
BsmAI	GTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	254, 758
Bsp143I	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
BspACI	CCGC	1 cut(s)	1166
BspANI	GGCC	1 cut(s)	676
BspDI	ATCGAT	2 cut(s)	822, 937
BspLI	GGNNCC	3 cut(s)	138, 183, 1031
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	6 cut(s)	565, 808, 1024, 1037, 1120, 1312
BsrI	ACTGG	4 cut(s)	237, 279, 544, 853
BssECI	CCNNGG	2 cut(s)	185, 677
BssMI	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
BssSI	CACGAG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	261, 488, 913
Bst6I	CTCTTC	2 cut(s)	95, 1148
BstDEI	CTNAG	2 cut(s)	470, 481
BstF5I	GGATG	6 cut(s)	174, 210, 324, 600, 783, 900
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	3 cut(s)	416, 994, 1304
BstKTI	GATC	8 cut(s)	573, 803, 1009, 1032, 1062, 1115, 1173, 1320
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
BstMWI	GCNNNNNNNGC	1 cut(s)	1089
BstNSI	RCATGY	1 cut(s)	1236
BstSFI	CTRYAG	1 cut(s)	463
BstV2I	GAAGAC	2 cut(s)	32, 1166
BstX2I	RGATCY	3 cut(s)	1029, 1059, 1317
BstYI	RGATCY	3 cut(s)	1029, 1059, 1317
Bsu15I	ATCGAT	2 cut(s)	822, 937
BsuRI	GGCC	1 cut(s)	676
BsuTUI	ATCGAT	2 cut(s)	822, 937
BtsCI	GGATG	6 cut(s)	174, 210, 324, 600, 783, 900
BtsIMutI	CAGTG	1 cut(s)	905
CfoI	GCGC	3 cut(s)	416, 994, 1304
Cfr13I	GGNCC	2 cut(s)	137, 944
ClaI	ATCGAT	2 cut(s)	822, 937
Csp6I	GTAC	2 cut(s)	110, 399
CspCI	CAANNNNNGTGG	2 cut(s)	1243, 1278
CviAII	CATG	6 cut(s)	644, 1135, 1174, 1233, 1312, 1340
CviQI	GTAC	2 cut(s)	110, 399
DdeI	CTNAG	2 cut(s)	470, 481
DpnI	GATC	8 cut(s)	572, 802, 1008, 1031, 1061, 1114, 1172, 1319
DpnII	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
DraIII	CACNNNGTG	1 cut(s)	1296
DrdI	GACNNNNNNGTC	1 cut(s)	916
DriI	GACNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	916
Eam1104I	CTCTTC	2 cut(s)	95, 1148
Eam1105I	GACNNNNNGTC	1 cut(s)	119
EarI	CTCTTC	2 cut(s)	95, 1148
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	677
Eco147I	AGGCCT	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	137, 944
Eco47III	AGCGCT	1 cut(s)	993
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	677
EcoT22I	ATGCAT	1 cut(s)	836
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	677
FaeI	CATG	6 cut(s)	647, 1138, 1177, 1236, 1315, 1343
FalI	AAGNNNNNCTT	2 cut(s)	1046, 1078
FatI	CATG	6 cut(s)	643, 1134, 1173, 1232, 1311, 1339
FauNDI	CATATG	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	552
FokI	GGATG	6 cut(s)	181, 217, 331, 607, 790, 907
FriOI	GRGCYC	1 cut(s)	254
FspBI	CTAG	3 cut(s)	97, 163, 1258
FspI	TGCGCA	1 cut(s)	415
GlaI	GCGC	3 cut(s)	415, 993, 1303
GsuI	CTGGAG	2 cut(s)	497, 561
HaeII	RGCGCY	1 cut(s)	995
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	1110
HhaI	GCGC	3 cut(s)	416, 994, 1304
Hin1II	CATG	6 cut(s)	647, 1138, 1177, 1236, 1315, 1343
Hin6I	GCGC	3 cut(s)	414, 992, 1302
HinP1I	GCGC	3 cut(s)	414, 992, 1302
HincII	GTYRAC	2 cut(s)	1180, 1238
HindII	GTYRAC	2 cut(s)	1180, 1238
HindIII	AAGCTT	2 cut(s)	838, 1081
HpaII	CCGG	1 cut(s)	1110
Hpy166II	GTNNAC	5 cut(s)	110, 553, 1180, 1203, 1238
Hpy188I	TCNGA	9 cut(s)	141, 186, 195, 265, 303, 862, 876, 1067, 1210
Hpy188III	TCNNGA	5 cut(s)	255, 310, 336, 921, 1033
Hpy8I	GTNNAC	5 cut(s)	110, 553, 1180, 1203, 1238
HpyAV	CCTTC	3 cut(s)	666, 874, 1135
HpyCH4III	ACNGT	3 cut(s)	261, 488, 913
HpyCH4V	TGCA	9 cut(s)	39, 451, 465, 600, 730, 741, 762, 834, 898
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1089
HpyF3I	CTNAG	2 cut(s)	470, 481
Hsp92II	CATG	6 cut(s)	647, 1138, 1177, 1236, 1315, 1343
HspAI	GCGC	3 cut(s)	414, 992, 1302
Kzo9I	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
LmnI	GCTCC	3 cut(s)	249, 681, 761
LweI	GCATC	1 cut(s)	885
MaeI	CTAG	3 cut(s)	97, 163, 1258
MaeIII	GTNAC	2 cut(s)	433, 604
MalI	GATC	8 cut(s)	572, 802, 1008, 1031, 1061, 1114, 1172, 1319
MboI	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	3 cut(s)	1029, 1059, 1317
MhlI	GDGCHC	2 cut(s)	254, 758
MluCI	AATT	6 cut(s)	85, 287, 575, 613, 736, 899
MlyI	GAGTC	2 cut(s)	313, 399
MmeI	TCCRAC	2 cut(s)	401, 560
Mph1103I	ATGCAT	1 cut(s)	836
MroXI	GAANNNNTTC	1 cut(s)	785
MseI	TTAA	6 cut(s)	581, 590, 656, 815, 1085, 1344
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	1 cut(s)	1110
MunI	CAATTG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	1089
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
NlaIII	CATG	6 cut(s)	647, 1138, 1177, 1236, 1315, 1343
NlaIV	GGNNCC	3 cut(s)	138, 183, 1031
NmuCI	GTSAC	1 cut(s)	604
NsbI	TGCGCA	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	1 cut(s)	1236
PceI	AGGCCT	1 cut(s)	676
PciI	ACATGT	1 cut(s)	1232
PctI	GAATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	8 cut(s)	190, 298, 474, 691, 934, 956, 1124, 1308
PleI	GAGTC	2 cut(s)	312, 399
PpsI	GAGTC	2 cut(s)	312, 399
PscI	ACATGT	1 cut(s)	1232
PsiI	TTATAA	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	138, 183, 1031
PspPI	GGNCC	2 cut(s)	137, 944
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	3 cut(s)	1029, 1059, 1317
RsaI	GTAC	2 cut(s)	111, 400
RsaNI	GTAC	2 cut(s)	110, 399
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	6 cut(s)	581, 590, 656, 815, 1085, 1344
Sau3AI	GATC	8 cut(s)	570, 800, 1006, 1029, 1059, 1112, 1170, 1317
Sau96I	GGNCC	2 cut(s)	137, 944
SchI	GAGTC	2 cut(s)	313, 399
SduI	GDGCHC	2 cut(s)	254, 758
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	137, 944
SmlI	CTYRAG	3 cut(s)	253, 334, 1196
SmoI	CTYRAG	3 cut(s)	253, 334, 1196
SpeI	ACTAGT	1 cut(s)	1257
Sse9I	AATT	6 cut(s)	85, 287, 575, 613, 736, 899
SseBI	AGGCCT	1 cut(s)	676
SsiI	CCGC	1 cut(s)	1166
SspMI	CTAG	3 cut(s)	97, 163, 1258
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	677
TaaI	ACNGT	3 cut(s)	261, 488, 913
TaqI	TCGA	9 cut(s)	130, 408, 493, 803, 822, 920, 937, 963, 999
TasI	AATT	6 cut(s)	85, 287, 575, 613, 736, 899
TfiI	GAWTC	8 cut(s)	190, 298, 474, 691, 934, 956, 1124, 1308
Tru1I	TTAA	6 cut(s)	581, 590, 656, 815, 1085, 1344
Tru9I	TTAA	6 cut(s)	581, 590, 656, 815, 1085, 1344
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	604
Tsp45I	GTSAC	1 cut(s)	604
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	912
VpaK11BI	GGWCC	2 cut(s)	137, 944
XceI	RCATGY	1 cut(s)	1236
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	3 cut(s)	97, 163, 1258
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.