Rh2CG585600

Protein of unknown function (DUF1666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002986
Physical Location & Seq
Forward (+)
76369606 .. 76374232
4627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG585600.1

Sequence Viewer

Length: 1914 bp
ATGTCTCCTCTTTCTGGGTCCTTCTCGGTTTTTGTCTCATCCATTTTGCACACTCTGTTCAGATTTTTCAGCTCAACCTTTGTCAGGTTTGAAAAAGAACAGAGTTCTCTGGTGAATGAGTCTTGTTCTTCAATTGAGCCAGCAGCTATGCCCCAAAAAGTTGAGTCTGAGGTTTCAAAAAGCGATGATGATTCGGAGTACTATGATGTTGAAGATGAAAAAGAGACGCCGGAGCCAATTTTTGTGTTCAAATTTGAGTATCAGACTAAAGCCGTATTAGAAGCAATGGAGAAAGTGAATGCTTATGGTCATTCTTCTGTTGGAACTAACGAAGAGAGTGAGAAATTTAGCGGCAGAAGGTACGAGTTTCAAGCCAAAAAGAATGTTAGTTTCTATGAGGAAGAAGCGAAAGTTGCAAGCTTTGTTGTCAGAGAAGCACCTGCTGATGACTCAAGTTGCGGTTCCATTGTGATTGAAAACGAGGGTGTTAAGCAATTGGATACAGAAGAATGTGTTGAAGAAGAAGAAGAAGCAAAAGTTGCGAGCTTTGTTGTCGAAGAAGAATCTGCTGATAAATCAAATTTTGGTTCCATTGGGACCGGAAGTGAGAGTGTTAAGCAACTGGTCACAGAAGATTGTGTTCATGAAGACATTCAAAATCCTCAGGATTCGAAGAAGAAACAAGTCGGGGAAGATTCTCATTCGGATAAAGAGGAACAACTGAAGTCTCAAGAACATGACTTTGTGGATGAGAAAGTTGCTTCTCATGAAGATAAGTTTCCGCAAGAAAAGGACTTTGTTTTAGTAGAATCTGCTTCCGATTCTGATTCGGGTTCTCTTTGTTCAAGCCCTGAGCTTTCATTTATAGGTCAATTTAGTGGTGATGGATTTTTGTTAGAAACAGATTTTGGGGAAAGGGTTGAATTTGGTGCTTTGGAAGACATCGATTTGCAGAATTTGGATGTTGGGTATGAGCCTGATGGATTTGATGAAGAAGATGAAGATATAATGGAACAACTTAAAGAGCTAGAAGAGTCAACTAGGAATGATGAACATCACAACCCAAAAGAGTCTAAACCTGAAGGATTTACTGCCAAAGATGAAAAACCAAATGAGGGTTTAGAAAATTTTGAACAGGTCAGTGGTCAAGATATGGCAGCTAAAGATTCTGAGGATCCGAACACATTGGAGACACTGTGGGAACATCAAGAATTGATAGAACAGTTGAAAATGGAGCTCAAGAAAGTCCGGGTTTCTGGTCTGCCTACCATCCTTGAAGAATCCGAGTCTCCGAATATGGAGGATTTGAAGCCATGGAAGATTGATGAAAAATACCATCATGTGGACAGAATGAGTGTGCTTCACAAGTTCTACAAGACCTACAGAGAACGAATGCGAAAATTCGACATTTTGAGTTACCAGAAGTTATATGCAATAGGATTTTTGCAGTCCAAGGACACGTTCGAAACCTTTTCAAGCAGCAAATCCTCAACTCCAGCAATCAAATCCTTTCTTTTGCAGAACTTTGGGCTATGCAAACCGAAGAAAAATTCTAATTCTGATTCTGACCCAATGGTTAAGTTCATTAGAGAATTGCATAGTGAATTGGAAGTGGTTTATGTTGGACAGTTGTGCCTTTCTTGGGAATTCCTTCAATGGCAATATGAGAAGGCATTGGAGCTTTGGGAATATGACGAATATGGATTACGTTCGTATAATGAAGTTGCCGAGGAATTTCAACAATTTCAAGTGCTCATGCAAAGATTTGTGGAGAATGAAAGCTTTCAAGGGCCAAGGGTCGAAACCTATGTCAAAAATCGATGTGTTATGCGGAATCTTATGCAAATTCCAGTGATTAGGGGTGAGAAATCTAAATTCAATTTCGTGTGTTTCCTTAGGGATATTACAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1666

Protein Analysis

637

Amino Acids

73.32

Weight (kDa)

4.52

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1666 PF07891 534 - 622 9.8e-40 Protein of unknown function (DUF1666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 1342
AciI CCGC 4 cut(s) 351, 459, 782, 1831
AclWI GGATC 2 cut(s) 1169, 1182
AcuI CTGAAG 2 cut(s) 743, 1101
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 2 cut(s) 200, 362
AfiI CCNNNNNNNGG 5 cut(s) 14, 84, 1115, 1342, 1642
AflIII ACRYGT 1 cut(s) 1458
AjuI GAANNNNNNNTTGG 4 cut(s) 891, 923, 1445, 1477
Alw21I GWGCWC 2 cut(s) 1239, 1755
Alw26I GTCTC 6 cut(s) 9, 40, 218, 732, 1184, 1293
AlwI GGATC 2 cut(s) 1169, 1182
AoxI GGCC 1 cut(s) 1790
ApeKI GCWGC 3 cut(s) 143, 1157, 1479
ArsI GACNNNNNNTTYG 2 cut(s) 1794, 1826
Asp700I GAANNNNTTC 3 cut(s) 651, 1650, 1782
AspS9I GGNCC 3 cut(s) 18, 597, 1790
AsuC2I CCSGG 1 cut(s) 1250
AsuHPI GGTGA 3 cut(s) 124, 893, 1874
AsuII TTCGAA 2 cut(s) 671, 1464
AvaII GGWCC 2 cut(s) 18, 597
AxyI CCTNAGG 2 cut(s) 663, 1895
BamHI GGATCC 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 1239
BbsI GAAGAC 2 cut(s) 654, 945
Bbv12I GWGCWC 2 cut(s) 1239, 1755
BbvI GCAGC 3 cut(s) 155, 1169, 1491
BccI CCATC 4 cut(s) 878, 974, 1277, 1344
BceAI ACGGC 1 cut(s) 257
BciVI GTATCC 1 cut(s) 493
BcnI CCSGG 1 cut(s) 1250
BcoDI GTCTC 6 cut(s) 9, 40, 218, 732, 1184, 1293
BfaI CTAG 2 cut(s) 1028, 1041
BfmI CTRYAG 1 cut(s) 1381
BfuAI ACCTGC 1 cut(s) 448
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 4 cut(s) 144, 352, 1158, 1480
BlsI GCNGC 4 cut(s) 145, 353, 1159, 1481
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 1250
Bme18I GGWCC 2 cut(s) 18, 597
BmgT120I GGNCC 3 cut(s) 18, 597, 1790
BmiI GGNNCC 6 cut(s) 19, 234, 463, 589, 598, 1176
BmrFI CCNGG 1 cut(s) 1250
BpiI GAAGAC 2 cut(s) 654, 945
BpmI CTGGAG 1 cut(s) 1479
Bpu10I CCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 2 cut(s) 671, 1464
BpuEI CTTGAG 3 cut(s) 436, 714, 1223
BpuMI CCSGG 1 cut(s) 1250
Bsa29I ATCGAT 2 cut(s) 945, 1819
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 4 cut(s) 1313, 1452, 1728, 1793
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 1181, 1211
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 84, 1115, 1342, 1642
Bse1I ACTGG 2 cut(s) 627, 1850
Bse21I CCTNAGG 2 cut(s) 663, 1895
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 1053
BseCI ATCGAT 2 cut(s) 945, 1819
BseDI CCNNGG 4 cut(s) 1313, 1452, 1728, 1793
BseGI GGATG 4 cut(s) 38, 754, 967, 1269
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 5 cut(s) 14, 84, 1115, 1342, 1642
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 4 cut(s) 159, 677, 843, 1161
BseNI ACTGG 2 cut(s) 627, 1850
BseXI GCAGC 3 cut(s) 155, 1169, 1491
BshFI GGCC 1 cut(s) 1792
BshVI ATCGAT 2 cut(s) 945, 1819
BsiHKAI GWGCWC 2 cut(s) 1239, 1755
BsiSI CCGG 3 cut(s) 230, 600, 1249
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 5 cut(s) 14, 84, 1115, 1342, 1642
BsmAI GTCTC 6 cut(s) 9, 40, 218, 732, 1184, 1293
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 2 cut(s) 304, 1398
BsnI GGCC 1 cut(s) 1792
Bsp119I TTCGAA 2 cut(s) 671, 1464
Bsp1286I GDGCHC 2 cut(s) 1239, 1755
Bsp143I GATC 1 cut(s) 1174
Bsp19I CCATGG 1 cut(s) 1313
BspACI CCGC 4 cut(s) 351, 459, 782, 1831
BspANI GGCC 1 cut(s) 1792
BspCNI CTCAG 4 cut(s) 160, 676, 844, 1162
BspDI ATCGAT 2 cut(s) 945, 1819
BspHI TCATGA 2 cut(s) 643, 766
BspLI GGNNCC 6 cut(s) 19, 234, 463, 589, 598, 1176
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 2 cut(s) 1169, 1182
BspT104I TTCGAA 2 cut(s) 671, 1464
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 2 cut(s) 627, 1850
BssECI CCNNGG 4 cut(s) 1313, 1452, 1728, 1793
BssMI GATC 1 cut(s) 1174
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 3 cut(s) 1313, 1452, 1793
Bst4CI ACNGT 3 cut(s) 1197, 1224, 1629
Bst6I CTCTTC 2 cut(s) 327, 1026
BstACI GRCGYC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBI TTCGAA 2 cut(s) 671, 1464
BstC8I GCNNGC 3 cut(s) 141, 418, 544
BstDEI CTNAG 5 cut(s) 168, 663, 852, 1170, 1895
BstDSI CCRYGG 1 cut(s) 1313
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 4 cut(s) 38, 754, 967, 1269
BstKTI GATC 1 cut(s) 1177
BstMAI GTCTC 6 cut(s) 9, 40, 218, 732, 1184, 1293
BstMBI GATC 1 cut(s) 1174
BstMWI GCNNNNNNNGC 2 cut(s) 413, 539
BstSCI CCNGG 1 cut(s) 1248
BstSFI CTRYAG 1 cut(s) 1381
BstV1I GCAGC 3 cut(s) 155, 1169, 1491
BstV2I GAAGAC 2 cut(s) 654, 945
BstX2I RGATCY 1 cut(s) 1174
BstYI RGATCY 1 cut(s) 1174
Bsu15I ATCGAT 2 cut(s) 945, 1819
Bsu36I CCTNAGG 2 cut(s) 663, 1895
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 1792
BsuTUI ATCGAT 2 cut(s) 945, 1819
BtgI CCRYGG 1 cut(s) 1313
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 38, 754, 967, 1269
BtsIMutI CAGTG 3 cut(s) 1147, 1193, 1857
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 141, 418, 544
CciI TCATGA 2 cut(s) 643, 766
Cfr13I GGNCC 3 cut(s) 18, 597, 1790
ClaI ATCGAT 2 cut(s) 945, 1819
CseI GACGC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 199, 361
CviAII CATG 6 cut(s) 644, 737, 767, 1314, 1340, 1756
CviQI GTAC 2 cut(s) 199, 361
DdeI CTNAG 5 cut(s) 168, 663, 852, 1170, 1895
DpnI GATC 1 cut(s) 1176
DpnII GATC 1 cut(s) 1174
Eam1104I CTCTTC 2 cut(s) 327, 1026
EarI CTCTTC 2 cut(s) 327, 1026
Ecl136II GAGCTC 1 cut(s) 1237
Eco130I CCWWGG 3 cut(s) 1313, 1452, 1793
Eco24I GRGCYC 1 cut(s) 1239
Eco47I GGWCC 2 cut(s) 18, 597
Eco53kI GAGCTC 1 cut(s) 1237
Eco57I CTGAAG 2 cut(s) 743, 1101
Eco81I CCTNAGG 2 cut(s) 663, 1895
EcoICRI GAGCTC 1 cut(s) 1237
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 1646
EcoT14I CCWWGG 3 cut(s) 1313, 1452, 1793
EcoT38I GRGCYC 1 cut(s) 1239
ErhI CCWWGG 3 cut(s) 1313, 1452, 1793
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 6 cut(s) 647, 740, 770, 1317, 1343, 1759
FaqI GGGAC 1 cut(s) 610
FatI CATG 6 cut(s) 643, 736, 766, 1313, 1339, 1755
Fnu4HI GCNGC 4 cut(s) 144, 352, 1158, 1480
FokI GGATG 4 cut(s) 25, 761, 974, 1256
FriOI GRGCYC 1 cut(s) 1239
Fsp4HI GCNGC 4 cut(s) 144, 352, 1158, 1480
FspBI CTAG 2 cut(s) 1028, 1041
GluI GCNGC 4 cut(s) 144, 352, 1158, 1480
GsuI CTGGAG 1 cut(s) 1479
HaeIII GGCC 1 cut(s) 1792
HapII CCGG 3 cut(s) 230, 600, 1249
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 6 cut(s) 647, 740, 770, 1317, 1343, 1759
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HindIII AAGCTT 2 cut(s) 418, 1780
HpaII CCGG 3 cut(s) 230, 600, 1249
HphI GGTGA 3 cut(s) 124, 893, 1874
Hpy166II GTNNAC 2 cut(s) 1038, 1345
Hpy188III TCNNGA 7 cut(s) 644, 665, 731, 767, 1148, 1208, 1240
Hpy8I GTNNAC 2 cut(s) 1038, 1345
HpyAV CCTTC 5 cut(s) 31, 351, 1076, 1661, 1663
HpyCH4III ACNGT 3 cut(s) 1197, 1224, 1629
HpyCH4IV ACGT 2 cut(s) 1460, 1708
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 539
HpyF3I CTNAG 5 cut(s) 168, 663, 852, 1170, 1895
HpySE526I ACGT 2 cut(s) 1460, 1708
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 6 cut(s) 647, 740, 770, 1317, 1343, 1759
Kzo9I GATC 1 cut(s) 1174
LmnI GCTCC 3 cut(s) 232, 1234, 1678
Lsp1109I GCAGC 3 cut(s) 155, 1169, 1491
MaeI CTAG 2 cut(s) 1028, 1041
MaeII ACGT 2 cut(s) 1460, 1708
MaeIII GTNAC 2 cut(s) 625, 1415
MalI GATC 1 cut(s) 1176
MboI GATC 1 cut(s) 1174
MfeI CAATTG 2 cut(s) 132, 494
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 2 cut(s) 1239, 1755
MlyI GAGTC 6 cut(s) 128, 173, 443, 1043, 1079, 1295
MmeI TCCRAC 2 cut(s) 301, 1603
MroXI GAANNNNTTC 3 cut(s) 651, 1650, 1782
MseI TTAA 5 cut(s) 489, 615, 1020, 1578, 1912
MspI CCGG 3 cut(s) 230, 600, 1249
MspR9I CCNGG 1 cut(s) 1250
MunI CAATTG 2 cut(s) 132, 494
Mva1269I GAATGC 2 cut(s) 304, 1398
MwoI GCNNNNNNNGC 2 cut(s) 413, 539
NciI CCSGG 1 cut(s) 1250
NcoI CCATGG 1 cut(s) 1313
NdeII GATC 1 cut(s) 1174
NlaIII CATG 6 cut(s) 647, 740, 770, 1317, 1343, 1759
NlaIV GGNNCC 6 cut(s) 19, 234, 463, 589, 598, 1176
NmeAIII GCCGAG 1 cut(s) 1753
NmuCI GTSAC 1 cut(s) 625
NspV TTCGAA 2 cut(s) 671, 1464
PagI TCATGA 2 cut(s) 643, 766
PaqCI CACCTGC 1 cut(s) 448
PctI GAATGC 2 cut(s) 304, 1398
PdmI GAANNNNTTC 3 cut(s) 651, 1650, 1782
PflMI CCANNNNNTGG 1 cut(s) 1342
PkrI GCNGC 4 cut(s) 145, 353, 1159, 1481
PleI GAGTC 6 cut(s) 127, 172, 443, 1042, 1078, 1294
PpsI GAGTC 6 cut(s) 127, 172, 443, 1042, 1078, 1294
PpuMI RGGWCCY 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 1239
Psp5II RGGWCCY 1 cut(s) 18
PspN4I GGNNCC 6 cut(s) 19, 234, 463, 589, 598, 1176
PspPI GGNCC 3 cut(s) 18, 597, 1790
PspPPI RGGWCCY 1 cut(s) 18
PsuI RGATCY 1 cut(s) 1174
RsaI GTAC 2 cut(s) 200, 362
RsaNI GTAC 2 cut(s) 199, 361
SacI GAGCTC 1 cut(s) 1239
SaqAI TTAA 5 cut(s) 489, 615, 1020, 1578, 1912
SatI GCNGC 4 cut(s) 144, 352, 1158, 1480
Sau3AI GATC 1 cut(s) 1174
Sau96I GGNCC 3 cut(s) 18, 597, 1790
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 6 cut(s) 128, 173, 443, 1043, 1079, 1295
ScrFI CCNGG 1 cut(s) 1250
SduI GDGCHC 2 cut(s) 1239, 1755
SfcI CTRYAG 1 cut(s) 1381
SfuI TTCGAA 2 cut(s) 671, 1464
SinI GGWCC 2 cut(s) 18, 597
SmlI CTYRAG 3 cut(s) 451, 729, 1238
SmoI CTYRAG 3 cut(s) 451, 729, 1238
SsiI CCGC 4 cut(s) 351, 459, 782, 1831
SspMI CTAG 2 cut(s) 1028, 1041
SstI GAGCTC 1 cut(s) 1239
StyD4I CCNGG 1 cut(s) 1248
StyI CCWWGG 3 cut(s) 1313, 1452, 1793
TaaI ACNGT 3 cut(s) 1197, 1224, 1629
TaiI ACGT 2 cut(s) 1463, 1711
TaqI TCGA 7 cut(s) 555, 671, 945, 1404, 1464, 1800, 1819
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 354
Tru1I TTAA 5 cut(s) 489, 615, 1020, 1578, 1912
Tru9I TTAA 5 cut(s) 489, 615, 1020, 1578, 1912
TscAI CASTG 3 cut(s) 1147, 1200, 1857
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 3 cut(s) 143, 1157, 1479
Tsp45I GTSAC 1 cut(s) 625
TspRI CASTG 3 cut(s) 1147, 1200, 1857
Van91I CCANNNNNTGG 1 cut(s) 1342
VpaK11BI GGWCC 2 cut(s) 18, 597
XagI CCTNNNNNAGG 1 cut(s) 82
XmnI GAANNNNTTC 3 cut(s) 651, 1650, 1782
XspI CTAG 2 cut(s) 1028, 1041
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.